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AT3G02060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEAD/DEAH box helicase, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEAD/DEAH box helicase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription-repair-coupling factor (InterPro:IPR005118), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Transcription factor CarD (InterPro:IPR003711), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT2G01440.1); Has 31166 Blast hits to 30948 proteins in 2896 species: Archae - 262; Bacteria - 19852; Metazoa - 1558; Fungi - 988; Plants - 649; Viruses - 13; Other Eukaryotes - 7844 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1097-MONOMERBioCyc:ARA:GQT-188-MONOMEREC:3.6.4.12EMBL:AC011664EMBL:AF370520EMBL:BT002188EMBL:CP002686
EnsemblPlants:AT3G02060EnsemblPlants:AT3G02060.1EnsemblPlants:AT3G02060.2entrez:821294ExpressionAtlas:F4JFJ3Gene3D:3.40.50.300GeneID:821294
GO:GO:0003677GO:GO:0004386GO:GO:0005524GO:GO:0009507hmmpanther:PTHR14025hmmpanther:PTHR14025:SF21HOGENOM:HOG000243844
InParanoid:F4JFJ3InterPro:IPR001650InterPro:IPR003711InterPro:IPR011545InterPro:IPR014001InterPro:IPR027417KEGG:ath:AT3G02060
OMA:FFIPEDYPaxDb:F4JFJ3Pfam:PF00270Pfam:PF00271Pfam:PF02559Pfscan:PS51192Pfscan:PS51194
PRIDE:F4JFJ3ProMEX:F4JFJ3PROSITE:PS51192PROSITE:PS51194ProteinModelPortal:F4JFJ3Proteomes:UP000006548RefSeq:NP_001078092.1
RefSeq:NP_566160.1SMART:SM00487SMART:SM00490SMART:SM01058SMR:F4JFJ3STRING:3702.AT3G02060.1SUPFAM:0052545
SUPFAM:0052550SUPFAM:SSF141259SUPFAM:SSF52540TAIR:AT3G02060UniGene:At.18700UniProt:F4JFJ3
Coordinates (TAIR10) chr3:+:354409..358319
Molecular Weight (calculated) 93934.60 Da
IEP (calculated) 9.14
GRAVY (calculated) -0.26
Length 823 amino acids
Sequence (TAIR10)
(BLAST)
001: MMSLLPNPDP ITVPLVLKLC SFPPPRRLFS LRLRRFTRKS SSLLPLVAVS SLSATAAKPT RWREKPELAE SDSISLLNER IRRDLGKRET ARPAMDSEEA
101: EKYIHMVKEQ QERGLQKLKG IRQGTKAAGD GAFSYKVDPY SLLSGDYVVH KKVGIGRFVG IKFDVPKDSS EPLEYVFIEY ADGMAKLPLK QASRLLYRYN
201: LPNETKRPRT LSRLSDTSVW ERRKTKGKVA IQKMVVDLME LYLHRLRQKR YPYPKNPIMA DFAAQFPYNA TPDQKQAFLD VEKDLTERET PMDRLICGDV
301: GFGKTEVALR AIFCVVSTGK QAMVLAPTIV LAKQHYDVIS ERFSLYPHIK VGLLSRFQTK AEKEEYLEMI KTGHLNIIVG THSLLGSRVV YSNLGLLVVD
401: EEQRFGVKQK EKIASFKTSV DVLTLSATPI PRTLYLALTG FRDASLISTP PPERIPIKTH LSSFRKEKVI EAIKNELDRG GQVFYVLPRI KGLEEVMDFL
501: EEAFPDIDIA MAHGKQYSKQ LEETMERFAQ GKIKILICTN IVESGLDIQN ANTIIIQDVQ QFGLAQLYQL RGRVGRADKE AHAYLFYPDK SLLSDQALER
601: LSALEECREL GQGFQLAEKD MGIRGFGTIF GEQQTGDVGN VGIDLFFEML FESLSKVEEL RIFSVPYDLV KIDININPRL PSEYVNYLEN PMEIIHEAEK
701: AAEKDMWSLM QFTENLRRQY GKEPYSMEII LKKLYVRRMA ADLGVNRIYA SGKMVVMKTN MSKKVFKLIT DSMTCDVYRS SLIYEGDQIM AELLLELPRE
801: QLLNWMFQCL SELHASLPAL IKY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)