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AT3G02010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1); Has 47268 Blast hits to 13605 proteins in 263 species: Archae - 0; Bacteria - 2; Metazoa - 64; Fungi - 106; Plants - 46551; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC010797EMBL:AC011664EMBL:CP002686EnsemblPlants:AT3G02010EnsemblPlants:AT3G02010.1
entrez:821085Gene3D:1.25.40.10GeneID:821085Genevisible:Q9S7F4GO:GO:0008270Gramene:AT3G02010.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF281HOGENOM:HOG000237570InParanoid:Q9S7F4InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867KEGG:ath:AT3G02010
OMA:YANCASIPaxDb:Q9S7F4Pfam:PF01535Pfam:PF13041Pfam:PF14432Pfam:Q9S7F4Pfscan:PS51375
PhylomeDB:Q9S7F4PRIDE:Q9S7F4PRO:PR:Q9S7F4PROSITE:PS51375ProteinModelPortal:Q9S7F4Proteomes:UP000006548RefSeq:NP_186850.1
SMR:Q9S7F4STRING:3702.AT3G02010.1TAIR:AT3G02010TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.53156UniProt:Q9S7F4
Coordinates (TAIR10) chr3:+:337965..340442
Molecular Weight (calculated) 92380.70 Da
IEP (calculated) 6.98
GRAVY (calculated) -0.17
Length 825 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLYCNSNEV RSRTLATLRQ LRQPSPATFL DTRRVDARII KTGFDTDTCR SNFIVEDLLR RGQVSAARKV YDEMPHKNTV STNTMISGHV KTGDVSSARD
101: LFDAMPDRTV VTWTILMGWY ARNSHFDEAF KLFRQMCRSS SCTLPDHVTF TTLLPGCNDA VPQNAVGQVH AFAVKLGFDT NPFLTVSNVL LKSYCEVRRL
201: DLACVLFEEI PEKDSVTFNT LITGYEKDGL YTESIHLFLK MRQSGHQPSD FTFSGVLKAV VGLHDFALGQ QLHALSVTTG FSRDASVGNQ ILDFYSKHDR
301: VLETRMLFDE MPELDFVSYN VVISSYSQAD QYEASLHFFR EMQCMGFDRR NFPFATMLSI AANLSSLQMG RQLHCQALLA TADSILHVGN SLVDMYAKCE
401: MFEEAELIFK SLPQRTTVSW TALISGYVQK GLHGAGLKLF TKMRGSNLRA DQSTFATVLK ASASFASLLL GKQLHAFIIR SGNLENVFSG SGLVDMYAKC
501: GSIKDAVQVF EEMPDRNAVS WNALISAHAD NGDGEAAIGA FAKMIESGLQ PDSVSILGVL TACSHCGFVE QGTEYFQAMS PIYGITPKKK HYACMLDLLG
601: RNGRFAEAEK LMDEMPFEPD EIMWSSVLNA CRIHKNQSLA ERAAEKLFSM EKLRDAAAYV SMSNIYAAAG EWEKVRDVKK AMRERGIKKV PAYSWVEVNH
701: KIHVFSSNDQ THPNGDEIVR KINELTAEIE REGYKPDTSS VVQDVDEQMK IESLKYHSER LAVAFALIST PEGCPIVVMK NLRACRDCHA AIKLISKIVK
801: REITVRDTSR FHHFSEGVCS CGDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)