AT3G02010.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1); Has 47268 Blast hits to 13605 proteins in 263 species: Archae - 0; Bacteria - 2; Metazoa - 64; Fungi - 106; Plants - 46551; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:337965..340442 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92380.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.98 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 825 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKLYCNSNEV RSRTLATLRQ LRQPSPATFL DTRRVDARII KTGFDTDTCR SNFIVEDLLR RGQVSAARKV YDEMPHKNTV STNTMISGHV KTGDVSSARD 101: LFDAMPDRTV VTWTILMGWY ARNSHFDEAF KLFRQMCRSS SCTLPDHVTF TTLLPGCNDA VPQNAVGQVH AFAVKLGFDT NPFLTVSNVL LKSYCEVRRL 201: DLACVLFEEI PEKDSVTFNT LITGYEKDGL YTESIHLFLK MRQSGHQPSD FTFSGVLKAV VGLHDFALGQ QLHALSVTTG FSRDASVGNQ ILDFYSKHDR 301: VLETRMLFDE MPELDFVSYN VVISSYSQAD QYEASLHFFR EMQCMGFDRR NFPFATMLSI AANLSSLQMG RQLHCQALLA TADSILHVGN SLVDMYAKCE 401: MFEEAELIFK SLPQRTTVSW TALISGYVQK GLHGAGLKLF TKMRGSNLRA DQSTFATVLK ASASFASLLL GKQLHAFIIR SGNLENVFSG SGLVDMYAKC 501: GSIKDAVQVF EEMPDRNAVS WNALISAHAD NGDGEAAIGA FAKMIESGLQ PDSVSILGVL TACSHCGFVE QGTEYFQAMS PIYGITPKKK HYACMLDLLG 601: RNGRFAEAEK LMDEMPFEPD EIMWSSVLNA CRIHKNQSLA ERAAEKLFSM EKLRDAAAYV SMSNIYAAAG EWEKVRDVKK AMRERGIKKV PAYSWVEVNH 701: KIHVFSSNDQ THPNGDEIVR KINELTAEIE REGYKPDTSS VVQDVDEQMK IESLKYHSER LAVAFALIST PEGCPIVVMK NLRACRDCHA AIKLISKIVK 801: REITVRDTSR FHHFSEGVCS CGDYW |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)