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AT3G01980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G55290.2); Has 52487 Blast hits to 52467 proteins in 3078 species: Archae - 436; Bacteria - 38325; Metazoa - 1234; Fungi - 2083; Plants - 1279; Viruses - 0; Other Eukaryotes - 9130 (source: NCBI BLink).
Protein Annotations
EMBL:AC011664EMBL:CP002686EnsemblPlants:AT3G01980EnsemblPlants:AT3G01980.1EnsemblPlants:AT3G01980.4entrez:821069ExpressionAtlas:Q9SG99
Gene3D:3.40.50.720GeneID:821069Gramene:AT3G01980.1Gramene:AT3G01980.4hmmpanther:PTHR24322hmmpanther:PTHR24322:SF378InterPro:IPR002347
InterPro:IPR016040PANTHER:PTHR24322Pfam:PF13561PhylomeDB:Q9SG99Proteomes:UP000006548RefSeq:NP_001078091.1RefSeq:NP_186847.1
SMR:Q9SG99SUPFAM:SSF51735TAIR:AT3G01980UniGene:At.22163UniProt:Q9SG99
Coordinates (TAIR10) chr3:-:327747..328833
Molecular Weight (calculated) 29198.00 Da
IEP (calculated) 7.85
GRAVY (calculated) -0.14
Length 266 amino acids
Sequence (TAIR10)
(BLAST)
001: MENPAKRVLM TSNGDEVSRN IAFHLAKHGC KLVMMGNEGS LRSIVDKIRD SIEGAFPADV IALDMESDSE VAFHAAVQKA WELSGHFDAF LNSYTYQGKV
101: QDILQVSQDE FHRITKINLT APWFLLKAVA TRMKDHGSGG SIVFMATIAS GERALYPGAD AYASTSAAIH QLVRASAMSL GKHKIRVNMI SRGLHLDDEY
201: TASVGRDRAQ KLVKDAAPLG QWLNPDTDLY STVIYLISDG SRFMTGTTVL VDGAQSLTRP RLKSYM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)