AT3G01930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.507 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G14120.1); Has 2385 Blast hits to 2366 proteins in 748 species: Archae - 24; Bacteria - 1277; Metazoa - 8; Fungi - 194; Plants - 581; Viruses - 0; Other Eukaryotes - 301 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:319289..320777 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51129.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.04 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.47 | ||||||||||||||||||||||||||||
| Length | 471 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MCILIFVGNN GETYFNTAAL VSGVQNFPKS RGPVVGILKG FAGLGGAILS QVYTMIHSSD RASLIFMVAV APSVVVVPLM FFIRPVGGHR QIRSSDATSF 101: TVIYAVCILL AAYLMAVMLV EDFIDLSHSI IIAFTVVLFA ILLVPIFIPI ATSCFTASTD PCDTLEEPLL GDQQGQDPGQ STTPDHGPEL IFSEVEDEKP 201: KEVDLLPAVE RHKRIAQLQA KLMQAAAEGA VRVKRRRGPH RGEDFTLTQA LVKADFWLIF FSLLLGSGSG LTVIDNLGQM SQSLGYDNTH VFVSMISIWN 301: FLGRIGGGYF SELIVRDYAY PRPVAIAVAQ LVMSVGHIFF AYGWPGAMHI GTLLIGLGYG AHWAIVPATA SELFGLKKFG ALYNFLTLAN PAGSLVFSGL 401: IASSIYDREA ERQAQGSLFN PDDVLRCRGS ICYFLTSLIM SGFCLIAAAL SMILVQRTKP VYTNLYGKTR N |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)