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AT3G01830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin-like 38 (TAIR:AT1G76650.3); Has 5650 Blast hits to 5606 proteins in 833 species: Archae - 0; Bacteria - 6; Metazoa - 2238; Fungi - 938; Plants - 1778; Viruses - 0; Other Eukaryotes - 690 (source: NCBI BLink).
Protein Annotations
DNASU:820033eggNOG:COG5126eggNOG:KOG0027EMBL:AC010797EMBL:AY088502EMBL:BT004176EMBL:BT006085
EMBL:CP002686EnsemblPlants:AT3G01830EnsemblPlants:AT3G01830.1entrez:820033Gene3D:1.10.238.10GeneID:820033Genevisible:Q9SGI8
GO:GO:0005509hmmpanther:PTHR10891hmmpanther:PTHR10891:SF622HOGENOM:HOG000233018InParanoid:Q9SGI8InterPro:IPR002048InterPro:IPR011992
InterPro:IPR018247iPTMnet:Q9SGI8KEGG:ath:AT3G01830KO:K13448OMA:CEVMISQPaxDb:Q9SGI8Pfam:PF13833
Pfam:Q9SGI8Pfscan:PS50222PhylomeDB:Q9SGI8PRIDE:Q9SGI8PRO:PR:Q9SGI8PROSITE:PS00018PROSITE:PS50222
ProteinModelPortal:Q9SGI8Proteomes:UP000006548RefSeq:NP_566152.1RefSeq:NP_974207.1scanprosite:PS00018SMART:SM00054SMR:Q9SGI8
STRING:3702.AT3G01830.1SUPFAM:SSF47473TAIR:AT3G01830UniGene:At.41224UniProt:Q9SGI8
Coordinates (TAIR10) chr3:+:296114..296554
Molecular Weight (calculated) 16769.60 Da
IEP (calculated) 4.41
GRAVY (calculated) -0.84
Length 146 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSENVNKRD EYQRVFSCFD KSHQGKVSVS TIERCVDAIK SGKRAVVDQE DTTNPNPEES TDDKSLELED FVKLVEEGEE ADKEKDLKEA FKLYEESEGI
101: TPKSLKRMLS LLGESKSLKD CEVMISQFDI NRDGIINFDE FRAMMQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)