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AT3G01810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1327 Blast hits to 470 proteins in 132 species: Archae - 2; Bacteria - 131; Metazoa - 139; Fungi - 114; Plants - 114; Viruses - 0; Other Eukaryotes - 827 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEU7eggNOG:ENOG410XXIEEMBL:AC010797EMBL:AK117380
EMBL:CP002686EnsemblPlants:AT3G01810EnsemblPlants:AT3G01810.1EnsemblPlants:AT3G01810.3
entrez:821073ExpressionAtlas:Q9SGJ0GeneID:821073GO:GO:0005886
Gramene:AT3G01810.1Gramene:AT3G01810.3hmmpanther:PTHR31344hmmpanther:PTHR31344:SF1
HOGENOM:HOG000243212InterPro:IPR019448ncoils:CoilOMA:DIKPWPP
Pfam:PF10358PhylomeDB:Q9SGJ0Proteomes:UP000006548RefSeq:NP_001189790.1
RefSeq:NP_186830.1STRING:3702.AT3G01810.1TAIR:AT3G01810UniGene:At.27588
UniProt:Q9SGJ0
Coordinates (TAIR10) chr3:+:289218..292557
Molecular Weight (calculated) 101709.00 Da
IEP (calculated) 6.34
GRAVY (calculated) -0.49
Length 921 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLGLSSKNR RCSSVQVDYL IHIHDIKPWP PSQSLRSLRS VVIQWENGDR NSGTTSVVAP SLGSVIGEGK IEFNESFKLP LTLLKDVSAR GKGGDVFFKN
101: VLELNLYEPR REKTHQLLAT ATIDLAVYGV VKESFSLTAQ MNSKRSYRNA TQPVLYLTIQ PVSRRRASSS SMNSLKDEAK NGGESVSALM NEEYYKEAEI
201: ASITDDDISS HSSLTVSSST LESNGGFSVR TEEEEHERIN KNPRGNGHER SKSVSESRQR QIADQIPSRS SSVDLSSVFH LPEGISDSAP NTSLSGLEHC
301: ANVFITDTNE SSKLASNGQH NNGEAKSVPL QIDNLSENAS PRASVNSQDL TSDQEPESIV EKSRKVKSVR SSLDINRSNS RLSLFSERKE AKVYPNSTHD
401: TTLESKIKNL ESRVKKLEGE LCEAAAIEAA LYSVVAEHGS SSSKVHAPAR RLLRLYLHAC RETHLSRRAN AAESAVSGLV LVAKACGNDV PRLTFWLSNT
501: IVLRTIISDT SAEEELPVSA GPGPRKQKAE RETEKRSSLK WKDSPLSKKD IKSFGAWDDP VTFITALEKV EAWIFSRVVE SIWWQTLTPR MQSSAASTRE
601: FDKGNGSASK KTFGRTPSST NQELGDFSLE LWKKAFREAH ERLCPLRGSG HECGCLPIPA RLIMEQCVAR LDVAMFNAIL RDSDDNFPTD PVSDPIADLR
701: VLPIPSRTSS FGSGAQLKNS IGNWSRWLTD LFGIDDEDDD SSDENSYVEK SFKTFNLLKA LSDLMMLPKD MLLNSSVRKE VCPMFGAPLI KRVLNNFVPD
801: EFCPDPVPDA VLKSLESEEE AEKSIITSYP CTAPSPVYCP PSRTSISTII GNFGQPQAPQ LSRIRSSITR KAYTSDDELD ELSSPLAVVV LQQAGSKKIN
901: NGDADETIRY QLLRECWMNG E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)