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AT3G01770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : bromodomain and extraterminal domain protein 10
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
bromodomain and extraterminal domain protein 10 (BET10); CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: bromodomain and extraterminal domain protein 9 (TAIR:AT5G14270.2); Has 12383 Blast hits to 9735 proteins in 571 species: Archae - 25; Bacteria - 644; Metazoa - 6126; Fungi - 1754; Plants - 803; Viruses - 19; Other Eukaryotes - 3012 (source: NCBI BLink).
Protein Annotations
BioGrid:6416eggNOG:COG5076eggNOG:KOG1474EMBL:AC009325EMBL:AC010797EMBL:AY057662EMBL:AY099729
EMBL:AY128906EMBL:CP002686EnsemblPlants:AT3G01770EnsemblPlants:AT3G01770.1entrez:821083Gene3D:1.20.920.10GeneID:821083
Genevisible:Q93ZB7GO:GO:0005634GO:GO:0006351GO:GO:0045893Gramene:AT3G01770.1hmmpanther:PTHR22880hmmpanther:PTHR22880:SF153
HOGENOM:HOG000242557InParanoid:Q93ZB7IntAct:Q93ZB7InterPro:IPR001487InterPro:IPR027353iPTMnet:Q93ZB7KEGG:ath:AT3G01770
ncoils:CoilOMA:DIGNYEHPaxDb:Q93ZB7Pfam:PF00439Pfam:PF17035Pfam:Q93ZB7Pfscan:PS50014
Pfscan:PS51525PhylomeDB:Q93ZB7PRIDE:Q93ZB7PRINTS:PR00503PRO:PR:Q93ZB7PROSITE:PS50014PROSITE:PS51525
ProteinModelPortal:Q93ZB7Proteomes:UP000006548RefSeq:NP_566151.1SMART:SM00297SMR:Q93ZB7STRING:3702.AT3G01770.1SUPFAM:SSF47370
TAIR:AT3G01770tair10-symbols:ATBET10tair10-symbols:BET10UniGene:At.18478UniProt:Q93ZB7
Coordinates (TAIR10) chr3:-:275582..278386
Molecular Weight (calculated) 69885.20 Da
IEP (calculated) 5.11
GRAVY (calculated) -0.78
Length 620 amino acids
Sequence (TAIR10)
(BLAST)
001: MTVRNGGFPG DYNRNSFDSP GGCDDSPNAS KDDETFGVPR IVLPLSDLSS SERRKWIHTL RQELEQLRSF QKSVGDLLPI SKIVTSTPAS NVSRPKSFGM
101: SRCSTGPGKR VLPFTATKPE PVTTSTMLRM KQCESLLKRL MSQQHCWLFN TPVDVVKLNI PDYFTIIKHP MDLGTVKSKL TSGTYSSPSE FSADVRLTFR
201: NAMTYNPSDN NVYRFADTLS KFFEVRWKTI EKKSSGTKSE PSNLATLAHK DIAIPEPVAK KRKMNAVKRN SLLEPAKRVM TDEDRVKLGR DLGSLTEFPV
301: QIINFLRDHS SKEERSGDDE IEIDINDLSH DALFQLRDLF DEFLRENQKK DSNGEPCVLE LLHGSGPGNS LTQHCDGSEL EDEDVDIGNY EHPISHISTV
401: RTEKDSVGGL NQMEDASRGK LSLIEGADGH QDGNSAPKEK ELPPEKRYRA ALLKNRFADI ILKAQEITLN QNEKRDPETL QREKEELELQ KKKEKARLQA
501: EAKEAEEARR KAEAQEAKRK LELEREAARQ ALLEMEKSVE INENTRFLKD LELLKTVNTD QLRNLRDVGS ESDGLAVFGF GGSNPLEQLG LFMKHEEDED
601: ESDMLAFPDP GNEVEEGEID
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)