AT3G01750.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Ankyrin repeat family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G04140.1); Has 30372 Blast hits to 15038 proteins in 745 species: Archae - 53; Bacteria - 2422; Metazoa - 15116; Fungi - 2165; Plants - 2906; Viruses - 97; Other Eukaryotes - 7613 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:270615..272691 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73136.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.11 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||
| Length | 664 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPPTYFPLRW ESTGDQWWYA TPIDYAAANS QYDLVRELLR IDSNNLIKLT SLRRIRRLET VWDDDSQFHD VAACRSRVAR KLLAACDEGG SPGSKRNTLI 101: RSGYGGWLIY TAASAGDLAF VHDLLERNPL LVFGEGEYGV TDILYAAARS KNDDVFRLIY DFAVTPRFGT GGIEQQTGEI PAAYKWEMKN RAVHSASRGG 201: NLILLKELLS DCSVEHVLAF RDKQGSTILH SAAGKGKTQV VKELVASSYH LVDAVDNQGN TALHVAAYRG HADLVDVLIS ASPSLISARN NAGDTFLHAG 301: ISGFQTPAFE RLDKHTELMN RLITSAASKS QGDFVNYRNN EGRTALHLAI SGNVPLEFVE MLMSVKSIDI NIRDNAGMTP LDLIRQKPLS PTSDLLFRRL 401: VSAGGMFSCR DQSITSVVAS HLKDRGNFYS PGARFKTSDA EMFLSTRLEV APEKIGVVVP RHVRSSSCCI EIGQLNVMDE NHHLKKCRNA SVNSTTERLK 501: SVFHWPRVKK QPGHSKNNSD ISIISTTLET QETPVPLRQR FSKSSTSSLD PPNNNKRTLA VRSNQSSPRA KKKRFGSVRS RSSSFSKISI HSSSTSSTSS 601: MVDLKQKGVL IDTSIAGPSG LKRSEPVKNK VSEKQGSVRS RLKSHYFCFG TSALSVKTPA TVLV |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)