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AT3G01680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.934
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22198148 (2011): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK54eggNOG:ENOG4111ADIEMBL:AC009325EMBL:AK228096EMBL:BT008325EMBL:CP002686EMBL:HM162886
EnsemblPlants:AT3G01680EnsemblPlants:AT3G01680.1entrez:821097GeneID:821097Genevisible:Q9SS87GO:GO:0010088GO:GO:0042803
GO:GO:0043621Gramene:AT3G01680.1hmmpanther:PTHR33232hmmpanther:PTHR33232:SF4HOGENOM:HOG000005914InterPro:IPR027942InterPro:IPR027944
KEGG:ath:AT3G01680OMA:LWRRETFPaxDb:Q9SS87Pfam:PF14576Pfam:PF14577Pfam:Q9SS87PhylomeDB:Q9SS87
PRO:PR:Q9SS87ProteinModelPortal:Q9SS87Proteomes:UP000006548RefSeq:NP_186817.1STRING:3702.AT3G01680.1TAIR:AT3G01680UniGene:At.18470
UniProt:Q9SS87
Coordinates (TAIR10) chr3:+:252033..255246
Molecular Weight (calculated) 85275.00 Da
IEP (calculated) 6.48
GRAVY (calculated) -0.27
Length 740 amino acids
Sequence (TAIR10)
(BLAST)
001: MESLIKSQHA QQLAGHKNTT GKTPSMEMIP ATGLAMSSDE SMMLKLIQQT HSPDAREVQV RGLLSLVEDI LDRATLDSED TNASMLPLPT EDKLMQSSMM
101: SVLDSVSYAI DRVACEIAYK SLTGSDSHEI TMSVFEHLSS FQWDGKLVLT LAAFALNYGE FWLLVQFYSK NQLAKSLAML KLVPVQNRVT LESVSQGLND
201: LIREMKSVTA CVVELSELPD RYITPDVPQL SRILSTIPIA VYWTIRSVIA CISQINMITA MGHEMMNTQM DLWETSMLAN KLKNIHDHLA ETLRLCYRHI
301: EKQRSSESLK VLHSLFDTTH IDNMKILTAL VHPKPHITPL QDGLTKRKVH LDVLRRKTVL LLISDLNILQ DELSIFEQIY TESRRNLVGV DGKSHMPYEV
401: VWVPVVDPIE DFERSPILQK KFEDLRDPMP WYSVDSPKLI ERHVVEFMRG RWHFMNKPIL VVIDPQGNEA SLNALHMIWI WGTEAFPFTR SREEELWRRE
501: TFSLNLIVDG IDSVIFNWIK PDNYIFLYGG DDLDWIRRFT MAAKATAKDS NVNLEMAYVG KRNHSHREQI RRISEVIRSE NLSHSWAEPA LMWFFWTRLE
601: SMLYSKIQLG KADDHDDVMQ GIKKILSYDK LGGWALLSKG PEIVMIAHGA IERTMSVYDR TWKTHVPTKG YTKAMSDHHH DEVLRETGKP CGHFDFHITA
701: RSGRIPEKMN CFECQRPMEK YMSFSCCHDE KLHEDENYNF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)