AT3G01680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.964 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:252033..255246 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85275.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.48 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||
| Length | 740 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESLIKSQHA QQLAGHKNTT GKTPSMEMIP ATGLAMSSDE SMMLKLIQQT HSPDAREVQV RGLLSLVEDI LDRATLDSED TNASMLPLPT EDKLMQSSMM 101: SVLDSVSYAI DRVACEIAYK SLTGSDSHEI TMSVFEHLSS FQWDGKLVLT LAAFALNYGE FWLLVQFYSK NQLAKSLAML KLVPVQNRVT LESVSQGLND 201: LIREMKSVTA CVVELSELPD RYITPDVPQL SRILSTIPIA VYWTIRSVIA CISQINMITA MGHEMMNTQM DLWETSMLAN KLKNIHDHLA ETLRLCYRHI 301: EKQRSSESLK VLHSLFDTTH IDNMKILTAL VHPKPHITPL QDGLTKRKVH LDVLRRKTVL LLISDLNILQ DELSIFEQIY TESRRNLVGV DGKSHMPYEV 401: VWVPVVDPIE DFERSPILQK KFEDLRDPMP WYSVDSPKLI ERHVVEFMRG RWHFMNKPIL VVIDPQGNEA SLNALHMIWI WGTEAFPFTR SREEELWRRE 501: TFSLNLIVDG IDSVIFNWIK PDNYIFLYGG DDLDWIRRFT MAAKATAKDS NVNLEMAYVG KRNHSHREQI RRISEVIRSE NLSHSWAEPA LMWFFWTRLE 601: SMLYSKIQLG KADDHDDVMQ GIKKILSYDK LGGWALLSKG PEIVMIAHGA IERTMSVYDR TWKTHVPTKG YTKAMSDHHH DEVLRETGKP CGHFDFHITA 701: RSGRIPEKMN CFECQRPMEK YMSFSCCHDE KLHEDENYNF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)