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AT3G01610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.910
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cell division cycle 48C
Curator
Summary (TAIR10)
AAA-type ATPase - Over 90% homologous to CDC48a
Computational
Description (TAIR10)
cell division cycle 48C (CDC48C); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 65227 Blast hits to 39412 proteins in 3299 species: Archae - 1912; Bacteria - 27659; Metazoa - 8516; Fungi - 6329; Plants - 5583; Viruses - 58; Other Eukaryotes - 15170 (source: NCBI BLink).
Protein Annotations
BioGrid:6438eggNOG:COG0464eggNOG:KOG0733EMBL:AC009325
EMBL:AY136443EMBL:BT002135EMBL:CP002686EnsemblPlants:AT3G01610
EnsemblPlants:AT3G01610.1entrez:821105Gene3D:3.40.50.300GeneID:821105
Genevisible:Q9SS94GO:GO:0005524GO:GO:0005634GO:GO:0005856
GO:GO:0007049GO:GO:0009524GO:GO:0015031GO:GO:0051301
Gramene:AT3G01610.1hmmpanther:PTHR23077hmmpanther:PTHR23077:SF55HOGENOM:HOG000223225
InParanoid:Q9SS94IntAct:Q9SS94InterPro:IPR003593InterPro:IPR003959
InterPro:IPR003960InterPro:IPR027417iPTMnet:Q9SS94KEGG:ath:AT3G01610
KO:K14571MINT:MINT-8064697ncoils:CoilOMA:MGGGINR
PaxDb:Q9SS94Pfam:PF00004Pfam:Q9SS94PhylomeDB:Q9SS94
PRIDE:Q9SS94PRO:PR:Q9SS94PROSITE:PS00674ProteinModelPortal:Q9SS94
Proteomes:UP000006548RefSeq:NP_186810.2scanprosite:PS00674SMART:SM00382
SMR:Q9SS94STRING:3702.AT3G01610.1SUPFAM:SSF52540TAIR:AT3G01610
tair10-symbols:CDC48Ctair10-symbols:emb1354UniGene:At.27731UniGene:At.63552
UniProt:Q9SS94
Coordinates (TAIR10) chr3:+:231787..235057
Molecular Weight (calculated) 90009.70 Da
IEP (calculated) 6.46
GRAVY (calculated) -0.50
Length 820 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)