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AT3G01580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.890
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 41472 Blast hits to 13221 proteins in 229 species: Archae - 0; Bacteria - 3; Metazoa - 37; Fungi - 79; Plants - 40856; Viruses - 0; Other Eukaryotes - 497 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC009325EMBL:CP002686
EnsemblPlants:AT3G01580EnsemblPlants:AT3G01580.1entrez:821107Gene3D:1.25.40.10
GeneID:821107Genevisible:Q9SS97Gramene:AT3G01580.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF50HOGENOM:HOG000237570InParanoid:Q9SS97InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT3G01580OMA:KTHELAIPaxDb:Q9SS97
Pfam:PF01535Pfam:PF13041Pfam:Q9SS97Pfscan:PS51375
PhylomeDB:Q9SS97PRIDE:Q9SS97PRO:PR:Q9SS97PROSITE:PS51375
ProteinModelPortal:Q9SS97Proteomes:UP000006548RefSeq:NP_186807.2SMR:Q9SS97
STRING:3702.AT3G01580.1SUPFAM:SSF48452TAIR:AT3G01580TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.65055UniProt:Q9SS97
Coordinates (TAIR10) chr3:-:223529..225511
Molecular Weight (calculated) 74324.10 Da
IEP (calculated) 6.78
GRAVY (calculated) -0.06
Length 660 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFCRKFSSS VDARQMFGEM TKRSLYQWNT LLKSLSREKQ WEEVLYHFSH MFRDEEKPDN FTLPVALKAC GELREVNYGE MIHGFVKKDV TLGSDLYVGS
101: SLIYMYIKCG RMIEALRMFD ELEKPDIVTW SSMVSGFEKN GSPYQAVEFF RRMVMASDVT PDRVTLITLV SACTKLSNSR LGRCVHGFVI RRGFSNDLSL
201: VNSLLNCYAK SRAFKEAVNL FKMIAEKDVI SWSTVIACYV QNGAAAEALL VFNDMMDDGT EPNVATVLCV LQACAAAHDL EQGRKTHELA IRKGLETEVK
301: VSTALVDMYM KCFSPEEAYA VFSRIPRKDV VSWVALISGF TLNGMAHRSI EEFSIMLLEN NTRPDAILMV KVLGSCSELG FLEQAKCFHS YVIKYGFDSN
401: PFIGASLVEL YSRCGSLGNA SKVFNGIALK DTVVWTSLIT GYGIHGKGTK ALETFNHMVK SSEVKPNEVT FLSILSACSH AGLIHEGLRI FKLMVNDYRL
501: APNLEHYAVL VDLLGRVGDL DTAIEITKRM PFSPTPQILG TLLGACRIHQ NGEMAETVAK KLFELESNHA GYYMLMSNVY GVKGEWENVE KLRNSVKQRG
601: IKKGLAESLI EIRRKVHRFV ADDELHPEKE PVYGLLKELD LHMKEDLENC VYFEYEGDSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)