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AT3G01520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.500
cytosol 0.500
ASURE: cytosol,plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Adenine nucleotide alpha hydrolases-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, response to stress; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT5G14680.1); Has 2506 Blast hits to 2501 proteins in 678 species: Archae - 111; Bacteria - 1598; Metazoa - 89; Fungi - 33; Plants - 646; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Protein Annotations
DNASU:821122eggNOG:ENOG410JS55eggNOG:ENOG41119ANEMBL:AC009325EMBL:AF446878EMBL:AY052696EMBL:AY084275
EMBL:CP002686EnsemblPlants:AT3G01520EnsemblPlants:AT3G01520.1entrez:821122EvolutionaryTrace:Q8LGG8Gene3D:3.40.50.620GeneID:821122
Genevisible:Q8LGG8GO:GO:0005886GO:GO:0006950GO:GO:0016208Gramene:AT3G01520.1hmmpanther:PTHR31964hmmpanther:PTHR31964:SF49
HOGENOM:HOG000239396InParanoid:Q8LGG8InterPro:IPR006015InterPro:IPR006016InterPro:IPR014729KEGG:ath:AT3G01520OMA:DVICQEV
PaxDb:Q8LGG8PDB:2GM3PDBsum:2GM3Pfam:PF00582Pfam:Q8LGG8PhylomeDB:Q8LGG8PRIDE:Q8LGG8
PRINTS:PR01438PRO:PR:Q8LGG8ProteinModelPortal:Q8LGG8Proteomes:UP000006548RefSeq:NP_566140.1SMR:Q8LGG8STRING:3702.AT3G01520.1
SUPFAM:SSF52402TAIR:AT3G01520UniGene:At.26485UniGene:At.63553UniProt:Q8LGG8
Coordinates (TAIR10) chr3:+:208506..209921
Molecular Weight (calculated) 19569.40 Da
IEP (calculated) 5.69
GRAVY (calculated) -0.27
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSEPTKVMV AVNASTIKDY PNPSISCKRA FEWTLEKIVR SNTSDFKILL LHVQVVDEDG FDDVDSIYAS PEDFRDMRQS NKAKGLHLLE FFVNKCHEIG
101: VGCEAWIKTG DPKDVICQEV KRVRPDFLVV GSRGLGRFQK VFVGTVSAFC VKHAECPVMT IKRNADETPS DPADD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)