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AT3G01480.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cyclophilin 38
Curator
Summary (TAIR10)
Encodes a chloroplast cyclophilin functioning in the assembly and maintenance of photosystem II (PSII) supercomplexes.
Computational
Description (TAIR10)
cyclophilin 38 (CYP38); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, photosystem II assembly, photosystem II stabilization, defense response to bacterium; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT3G15520.1); Has 2157 Blast hits to 2154 proteins in 676 species: Archae - 40; Bacteria - 1435; Metazoa - 59; Fungi - 19; Plants - 86; Viruses - 0; Other Eukaryotes - 518 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G01480-MONOMERBioCyc:ARA:GQT-36-MONOMEREC:5.2.1.8eggNOG:COG0652eggNOG:ENOG410IEEWEMBL:AC009325EMBL:AK317631
EMBL:AY039843EMBL:AY087781EMBL:AY113168EMBL:AY568524EMBL:CP002686EnsemblPlants:AT3G01480EnsemblPlants:AT3G01480.1
EnsemblPlants:AT3G01480.2entrez:821137ExpressionAtlas:Q9SSA5Gene3D:1.20.120.290Gene3D:2.40.100.10GeneID:821137Genevisible:Q9SSA5
GO:GO:0003755GO:GO:0006457GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009543GO:GO:0009570
GO:GO:0009579GO:GO:0031977GO:GO:0042742hmmpanther:PTHR11071hmmpanther:PTHR11071:SF236HOGENOM:HOG000065979InParanoid:Q9SSA5
IntAct:Q9SSA5InterPro:IPR002130InterPro:IPR023222InterPro:IPR024936InterPro:IPR029000iPTMnet:Q9SSA5KEGG:ath:AT3G01480
OMA:RNAAFGYPANTHER:PTHR11071PaxDb:Q9SSA5PDB:3RFYPDBsum:3RFYPfam:PF00160Pfam:Q9SSA5
Pfscan:PS50072PhylomeDB:Q9SSA5PRIDE:Q9SSA5PRO:PR:Q9SSA5ProMEX:Q9SSA5PROSITE:PS50072ProteinModelPortal:Q9SSA5
Proteomes:UP000006548RefSeq:NP_001118550.1RefSeq:NP_186797.1SMR:Q9SSA5STRING:3702.AT3G01480.1SUPFAM:0048472SUPFAM:SSF101112
SUPFAM:SSF50891TAIR:AT3G01480tair10-symbols:ATCYP38tair10-symbols:CYP38UniGene:At.20535UniProt:Q9SSA5
Coordinates (TAIR10) chr3:+:188569..190674
Molecular Weight (calculated) 47984.50 Da
IEP (calculated) 4.79
GRAVY (calculated) -0.20
Length 437 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAAFASLPT FSVVNSSRFP RRRIGFSCSK KPLEVRCSSG NTRYTKQRGA FTSLKECAIS LALSVGLMVS VPSIALPPNA HAVANPVIPD VSVLISGPPI
101: KDPEALLRYA LPIDNKAIRE VQKPLEDITD SLKIAGVKAL DSVERNVRQA SRTLQQGKSI IVAGFAESKK DHGNEMIEKL EAGMQDMLKI VEDRKRDAVA
201: PKQKEILKYV GGIEEDMVDG FPYEVPEEYR NMPLLKGRAS VDMKVKIKDN PNIEDCVFRI VLDGYNAPVT AGNFVDLVER HFYDGMEIQR SDGFVVQTGD
301: PEGPAEGFID PSTEKTRTVP LEIMVTGEKT PFYGSTLEEL GLYKAQVVIP FNAFGTMAMA REEFENDSGS SQVFWLLKES ELTPSNSNIL DGRYAVFGYV
401: TDNEDFLADL KVGDVIESIQ VVSGLENLAN PSYKIAG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)