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AT3G01410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease H activity, nuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H family protein (TAIR:AT1G24090.1); Has 3179 Blast hits to 3179 proteins in 588 species: Archae - 77; Bacteria - 1109; Metazoa - 13; Fungi - 0; Plants - 1505; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0328eggNOG:ENOG410IEMWEMBL:CP002686EnsemblPlants:AT3G01410EnsemblPlants:AT3G01410.1EnsemblPlants:AT3G01410.2entrez:821319
Gene3D:3.30.420.10Gene3D:3.40.970.10GeneID:821319GO:GO:0003676GO:GO:0004523GO:GO:0016740Gramene:AT3G01410.1
Gramene:AT3G01410.2hmmpanther:PTHR33033hmmpanther:PTHR33033:SF13InterPro:IPR002156InterPro:IPR011320InterPro:IPR012337KEGG:ath:AT3G01410
OMA:LSECQAQPfam:PF13456Pfscan:PS50879PROSITE:PS50879Proteomes:UP000006548RefSeq:NP_001078087.1RefSeq:NP_186790.2
SMR:F4JEB4STRING:3702.AT3G01410.1SUPFAM:SSF53098TAIR:AT3G01410UniGene:At.43322UniProt:F4JEB4
Coordinates (TAIR10) chr3:-:153650..155439
Molecular Weight (calculated) 31672.60 Da
IEP (calculated) 8.93
GRAVY (calculated) -0.42
Length 294 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSTMEDEKD AFYIVRKGDI IGVYRSLSEC QGQAGSSVSH PAMSVYKGYG WPKGAEDLLS SFGIKNALFS VNASHVKDDA FGKLIPCPVQ QPSSSQGESL
101: NKSSPSKRLQ DMGSGESGSF SPSPPQKQLK IENDMLRRIP SSLLTRTPIR QNDSCTIEFD GASKGNPGKA GAGAVLRASD NSVLFYLREG VGNATNNVAE
201: YRALLLGLRS ALDKGFKNVH VLGDSMLVCM QVQGAWKTNH PKMAELCKQA KELMNSFKTF DIKHIAREKN SEADKQANSA IFLADGQTQV ISGG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)