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AT3G01390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): plant-type vacuole
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21166475 (2011): cytosol
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : vacuolar membrane ATPase 10
Curator
Summary (TAIR10)
Subunit G of the vacuolar membrane ATPAse complex
Computational
Description (TAIR10)
vacuolar membrane ATPase 10 (VMA10); FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism; INVOLVED IN: ATP hydrolysis coupled proton transport; LOCATED IN: plasma membrane, proton-transporting two-sector ATPase complex, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar (H+)-ATPase G subunit (InterPro:IPR005124); BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit G2 (TAIR:AT4G23710.1); Has 617 Blast hits to 615 proteins in 206 species: Archae - 2; Bacteria - 17; Metazoa - 284; Fungi - 124; Plants - 126; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111XX0eggNOG:KOG1772EMBL:AC010870EMBL:AF181688EMBL:AJ005901EMBL:AY072365EMBL:AY114730
EMBL:CP002686EnsemblPlants:AT3G01390EnsemblPlants:AT3G01390.1EnsemblPlants:AT3G01390.2entrez:821130GeneID:821130Genevisible:O82628
GO:GO:0000325GO:GO:0005773GO:GO:0005774GO:GO:0005794GO:GO:0005829GO:GO:0005886GO:GO:0015991
GO:GO:0016469GO:GO:0016471GO:GO:0046933Gramene:AT3G01390.1Gramene:AT3G01390.2hmmpanther:PTHR12713HOGENOM:HOG000186416
InParanoid:O82628IntAct:O82628InterPro:IPR005124KEGG:ath:AT3G01390KO:K02152ncoils:CoilOMA:HPNYRIT
PANTHER:PTHR12713PaxDb:O82628Pfam:O82628Pfam:PF03179PhylomeDB:O82628PIR:T51825PRIDE:O82628
PRO:PR:O82628ProteinModelPortal:O82628Proteomes:UP000006548RefSeq:NP_186788.1RefSeq:NP_850489.1SMR:O82628STRING:3702.AT3G01390.1
TAIR:AT3G01390tair10-symbols:AVMA10tair10-symbols:VMA10TCDB:3.A.2.2.5TIGRfam:TIGR01147TIGRFAMs:TIGR01147UniGene:At.22509
UniProt:O82628
Coordinates (TAIR10) chr3:-:150265..150922
Molecular Weight (calculated) 12397.60 Da
IEP (calculated) 5.82
GRAVY (calculated) -0.92
Length 110 amino acids
Sequence (TAIR10)
(BLAST)
001: MESNRGQGSI QQLLAAEVEA QHIVNAARTA KMARLKQAKE EAEKEIAEYK AQTEQDFQRK LEETSGDSGA NVKRLEQETD TKIEQLKNEA SRISKDVVEM
101: LLKHVTTVKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)