suba logo
AT3G01370.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 0.928
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CRM family member 2
Curator
Summary (TAIR10)
Encodes a protein containing a CRM domain that is involved in group I and group II intron splicing.
Computational
Description (TAIR10)
CRM family member 2 (CFM2); FUNCTIONS IN: RNA binding; INVOLVED IN: Group I intron splicing, Group II intron splicing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: CRM family member 3B (TAIR:AT4G14510.1); Has 1269 Blast hits to 881 proteins in 154 species: Archae - 0; Bacteria - 46; Metazoa - 247; Fungi - 72; Plants - 683; Viruses - 4; Other Eukaryotes - 217 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS9DeggNOG:KOG1990EMBL:AC010870EMBL:AY136347EMBL:BT010594EMBL:CP002686EnsemblPlants:AT3G01370
EnsemblPlants:AT3G01370.1entrez:821288Gene3D:3.30.110.60GeneID:821288GO:GO:0000372GO:GO:0000373GO:GO:0003723
GO:GO:0006397GO:GO:0009570GO:GO:0030529Gramene:AT3G01370.1hmmpanther:PTHR31846hmmpanther:PTHR31846:SF12IntAct:Q8L7C2
InterPro:IPR001890iPTMnet:Q8L7C2KEGG:ath:AT3G01370ncoils:CoilOMA:KTHFKKHPaxDb:Q8L7C2Pfam:PF01985
Pfscan:PS51295PhylomeDB:Q8L7C2PROSITE:PS51295ProteinModelPortal:Q8L7C2Proteomes:UP000006548RefSeq:NP_186786.2SMART:SM01103
STRING:3702.AT3G01370.1SUPFAM:SSF75471TAIR:AT3G01370tair10-symbols:ATCFM2tair10-symbols:CFM2UniGene:At.28082UniProt:Q8L7C2
Coordinates (TAIR10) chr3:+:139033..143477
Molecular Weight (calculated) 113669.00 Da
IEP (calculated) 9.14
GRAVY (calculated) -0.57
Length 1011 amino acids
Sequence (TAIR10)
(BLAST)
0001: MLLPLFHQQP LILAKTFPDR IFPPFLVPNT LVSRRNVSRA NSGIFCSSAS GRKTLPQSAI QRIAEKLRSL GFVEEKHDSP TRRITGEESG KNSPGEIFVP
0101: LPKQLPIHRV GHTIDTSWST PSYPVPKPGS GTAISRYHEL KRVWKKETEM ERKKEEKVPS LAELTLPPAE LRRLRTVGIR LTKKLKIGKA GITEGIVNGI
0201: HERWRTTEVV KIFCEDISRM NMKRTHDVLE TKTGGLVIWR SGSKILLYRG VNYQYPYFVS DRDLAHEAAS GASSMDQGVV DSREKQSIAE SSAPSITNKM
0301: VKPMLTQGVG SPDKVRFQLP GEVQLVEEAD RLLEGLGPRF TDWWAYDPLP VDGDLLPAVV PDYRRPFRLL PYGVSPKLTD DEMTTIRRLG RPLPCHFALG
0401: RNRNLQGLAV AIVKLWEKCE LAKIAVKRGV QNTNSELMAE ELKWLTGGTL ISRDKDFIVL YRGKDFLPSA VSSAIEERRR QTMIMENSSV HGNKLTENEE
0501: EIKPRAVKED IELEAKDQKD HIQTHQMKSR QRNSPEAILE KTSMKLSMAL EKKANAEKVL ADLENRESPQ LSDIDKEGIT NDEKYMLRKI GLKMKPFLLL
0601: GRRGVFDGTI ENMHLHWKYR ELVKIICNEY SIEAAHKVAE ILEAESGGIL VAVEMVSKGY AIIVYRGKNY ERPQCLRPQT LLSKREALKR SVEAQRRKSL
0701: KLHVLKLSNN IEELNRQLVE DSATNETWSD GESSNMMVEE ETENQHTEPE KAREKIELGY SSDLSVPSSG EENWEDDSEG EVDPLTTSSQ EYQEDESESA
0801: SSQRHEGNSL DSTANLSVFA ETGSANASSF HDRSLPHNSF LNANRKLPGS STGSGSQISA LRERKSENDG LVTDLSNRER LILRKQALKM KKRPPFAVGR
0901: SNVVTGLART LKMHFQKNPL AIVNVKGRAN GTSVQEVIAK LKEETGALLV SQEPSKVILY RGWGAEEEMK SFYPNNNVKS SINLPSTRSF VDDPPHVSPA
1001: LIEAIRLECG L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)