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AT3G01350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.813
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G14940.1); Has 5067 Blast hits to 4897 proteins in 853 species: Archae - 0; Bacteria - 1586; Metazoa - 472; Fungi - 442; Plants - 2170; Viruses - 0; Other Eukaryotes - 397 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3104eggNOG:KOG1237EMBL:AC010676EMBL:CP002686
EnsemblPlants:AT3G01350EnsemblPlants:AT3G01350.1entrez:819616GeneID:819616
Genevisible:Q9SRI2GO:GO:0005215GO:GO:0016021Gramene:AT3G01350.1
hmmpanther:PTHR11654hmmpanther:PTHR11654:SF82HOGENOM:HOG000237400InParanoid:Q9SRI2
InterPro:IPR000109InterPro:IPR020846KEGG:ath:AT3G01350OMA:GMERYAF
PANTHER:PTHR11654PaxDb:Q9SRI2Pfam:PF00854Pfam:Q9SRI2
PhylomeDB:Q9SRI2PRIDE:Q9SRI2PRO:PR:Q9SRI2ProteinModelPortal:Q9SRI2
Proteomes:UP000006548RefSeq:NP_186784.1SMR:Q9SRI2STRING:3702.AT3G01350.1
SUPFAM:SSF103473TAIR:AT3G01350TMHMM:TMhelixUniGene:At.41291
UniProt:Q9SRI2
Coordinates (TAIR10) chr3:+:135024..137460
Molecular Weight (calculated) 62786.00 Da
IEP (calculated) 8.56
GRAVY (calculated) 0.29
Length 563 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLEQKTRGL SKSCALLIVI AGMERYAFKG VASNLVTYLT DVVKMSNSRA AKTVNTWAGF TSMLPLFSAP LADTYWDRFF TILASSSVYF VGLVGLTWTA
101: FAGSRSATKT ISSYFLYSSL CLVSIGLGVL NPSLQAFGAD QLDHDLDKNF DLSSGDQKDA KATRKTQFFQ LWYFGVCTGS LMGVTVMAYI QDTFGWVLGF
201: AIPGIVIFLS ILVFMSGCGI YVYAPGARLK KKTTTTPFEK ILKFIKGRVV KQRSIYTLAD EKDLDAMELE LEERPLCKCE TEDIETPSTT SKGLEDDESS
301: KTVFSGIDNV KLVIRLFPIW MMLLMFAVIF QLPATFFTKQ GVTMKRNIGS NFKIPPATLQ STITLSIILL MPLYDKILIP ITKRIKKNGT GISVMERMGV
401: GMFLSIIAIV IAAIVERKRL AISQKMKTLP DYDPETVPLS IFWLLPQYIL LGISDIFTVV GMQEFFYSEV PVRMRTMGFA LYTSVFGVGS FVSAALISIV
501: EAYSSSTGDR QNWFADDMSE ARLDKYYWLL ALTSTISFVV YIFLCKFFKS SSDQGDEKEE APK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)