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AT3G01340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: intracellular protein transport, membrane budding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G30050.1); Has 22236 Blast hits to 13979 proteins in 554 species: Archae - 24; Bacteria - 4553; Metazoa - 7942; Fungi - 4712; Plants - 2416; Viruses - 0; Other Eukaryotes - 2589 (source: NCBI BLink).
Protein Annotations
BioGrid:6549DNASU:821216eggNOG:ENOG410XPFMeggNOG:KOG1332
EMBL:AC010676EMBL:AF370262EMBL:AY063079EMBL:AY087647
EMBL:CP002686EnsemblPlants:AT3G01340EnsemblPlants:AT3G01340.1EnsemblPlants:AT3G01340.2
entrez:821216Gene3D:2.130.10.10GeneID:821216Genevisible:Q9SRI1
GO:GO:0005783GO:GO:0005794GO:GO:0005829GO:GO:0015031
GO:GO:0016192Gramene:AT3G01340.1Gramene:AT3G01340.2hmmpanther:PTHR11024
HOGENOM:HOG000216895InParanoid:Q9SRI1IntAct:Q9SRI1InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986InterPro:IPR020472KEGG:ath:AT3G01340
KO:K14004OMA:KIETGHSPaxDb:Q9SRI1Pfam:PF00400
Pfam:Q9SRI1Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q9SRI1
PRIDE:Q9SRI1PRINTS:PR00320PRO:PR:Q9SRI1ProMEX:Q9SRI1
PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:Q9SRI1Proteomes:UP000006548
Reactome:R-ATH-204005RefSeq:NP_001030616.1RefSeq:NP_186783.1SMART:SM00320
SMR:Q9SRI1STRING:3702.AT3G01340.1SUPFAM:SSF50978TAIR:AT3G01340
UniGene:At.18565UniProt:Q9SRI1
Coordinates (TAIR10) chr3:-:127557..128465
Molecular Weight (calculated) 32632.10 Da
IEP (calculated) 5.98
GRAVY (calculated) -0.24
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MPPQKIETGH SDTIHDVVMD YYGKRVATAS SDCTIKITGV SNSGGSQHLA TLTGHRGPVW QVAWAHPKFG SLLASCSYDG QIILWKEGNQ NQWTQAHVFT
101: DHKVSVNSIA WAPHELGLSL ACGASDGNIS VFSARADGGW DTTKIDQAHP VGVTSVSWAP ATEPGALVSS GMIDPVYKLA SGGCDSTVKV WKFSNGSWKM
201: DCFPALNKHT DWVRDVAWAP NLGLPKSTIA SGSEDGKVII WTIGKEGEQW EGTVLKDFKT PVWRVSWSLT GNLLAVSDGN NNVTVWKESV DGEWEQVTVV
301: EP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)