AT3G01310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phosphoglycerate mutase-like family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phosphoglycerate mutase-like family protein; FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, acid phosphatase activity; INVOLVED IN: oxidation reduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATP-grasp fold, RimK-type (InterPro:IPR013651), Histidine phosphatase superfamily, clade-2 (InterPro:IPR000560), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase-like family protein (TAIR:AT5G15070.1); Has 618 Blast hits to 482 proteins in 186 species: Archae - 0; Bacteria - 7; Metazoa - 225; Fungi - 193; Plants - 69; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:94343..101603 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 119534.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.71 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1056 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEMEEGASGV GEKIKIGVCV MEKKVKCGSE VFSAPMGEIL DRLQSFGEFE ILHFGDKVIL EDPIESWPIC DCLIAFHSSG YPLEKAQAYA ALRKPFLVNE 0101: LDPQYLLHDR RKVYEHLEMY GIPVPRYACV NRKVPNQDLH YFVEEEDFVE VHGERFWKPF VEKPVNGDDH SIMIYYPSSA GGGMKELFRK IGNRSSEFHP 0201: DVRRVRREGS YIYEEFMATG GTDVKVYTVG PEYAHAEARK SPVVDGVVMR NTDGKEVRYP VLLTPAEKQM AREVCIAFRQ AVCGFDLLRS EGCSYVCDVN 0301: GWSFVKNSYK YYDDAACVLR KMCLDAKAPH LSSTLPPTLP WKVNEPVQSN EGLTRQGSGI IGTFGQSEEL RCVIAVVRHG DRTPKQKVKL KVTEEKLLNL 0401: MLKYNGGKPR AETKLKSAVQ LQDLLDATRM LVPRTRPGRE SDSDAEDLEH AEKLRQVKAV LEEGGHFSGI YRKVQLKPLK WVKIPKSDGD GEEERPVEAL 0501: MVLKYGGVLT HAGRKQAEEL GRYFRNNMYP GEGTGLLRLH STYRHDLKIY SSDEGRVQMS AAAFAKGLLD LEGQLTPILV SLVSKDSSML DGLDNASIEM 0601: EAAKARLNEI VTSGTKMIDD DQVSSEDFPW MTDGAGLPPN AHELLRELVK LTKNVTEQVR LLAMDEDENL TEPYDIIPPY DQAKALGKTN IDSDRIASGL 0701: PCGSEGFLLM FARWIKLARD LYNERKDRFD ITQIPDVYDS CKYDLLHNSH LDLKGLDELF KVAQLLADGV IPNEYGINPQ QKLKIGSKIA RRLMGKILID 0801: LRNTREEALS VAELKESQEQ VLSLSASQRE DRNSQPKLFI NSDELRRPGT GDKDEDDDKE TKYRLDPKYA NVKTPERHVR TRLYFTSESH IHSLMNVLRY 0901: CNLDESLLGE ESLICQNALE RLCKTKELDY MSYIVLRLFE NTEVSLEDPK RFRIELTFSR GADLSPLRNN DDEAETLLRE HTLPIMGPER LQEVGSCLSL 1001: ETMEKMVRPF AMPAEDFPPA STPVGFSGYF SKSAAVLERL VNLFHNYKNS SSNGRS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)