AT3G01260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.988 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Galactose mutarotase-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Galactose mutarotase-like superfamily protein; FUNCTIONS IN: carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, hexose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase, subgroup (InterPro:IPR015443), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT5G15140.1); Has 6350 Blast hits to 6088 proteins in 1398 species: Archae - 6; Bacteria - 3037; Metazoa - 664; Fungi - 417; Plants - 287; Viruses - 26; Other Eukaryotes - 1913 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:80244..82005 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47742.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.00 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||||||||||||||
| Length | 426 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVRISVLVCL VLLVTIGVMV SVSLADNNEE KSTDLKKFKG GVTDHSISKA NDNDHDDDDH DQDDDNDGDH DDDDHDDDND HDDDNNDHDD DDNNDDNNDG 101: DDDHDDDNND DGDDEKKTLR VHELKKGNLT VKFTNRGASI MSLLFPNING KLEDIVLGYD SVNDHMIDTV FCGVTLARVA SKKEKAAAND GKNTIHGGTK 201: ESSDVIWRVK KHKHNGKKPY IVFTYTTSPD GDQGKLEVTV TYKLVGENRL KMVMQAKAKE KTTPLNLVHR SYWNLGGHNN EDIFSEEIQI LGSGYTHLDD 301: NLTPTGKILA VKGTPFDFRQ LRPIKDNINE LKTGYGINYC LDGVANKMRK VVELVDNKSK IKMELSTDQS GLRLKTTKPK NGSVHKAYSG LCLESHAINY 401: QYRSSQIIEP GETYKHTMLF KFSFVP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)