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AT3G01220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homeobox protein 20
Curator
Summary (TAIR10)
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Expressed during seed germination in the micropylar endosperm and in the root cap, and increases ABA sensitivity and seed dormancy when mutated.
Computational
Description (TAIR10)
homeobox protein 20 (HB20); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox 3 (TAIR:AT5G15150.1); Has 9615 Blast hits to 9578 proteins in 515 species: Archae - 0; Bacteria - 1; Metazoa - 7277; Fungi - 141; Plants - 2025; Viruses - 4; Other Eukaryotes - 167 (source: NCBI BLink).
Protein Annotations
BioGrid:6565eggNOG:ENOG410Z2UEeggNOG:KOG0483EMBL:AC008261EMBL:AK228890EMBL:AY087631EMBL:BT029221
EMBL:CP002686EnsemblPlants:AT3G01220EnsemblPlants:AT3G01220.1entrez:821232Gene3D:1.10.10.60GeneID:821232Genevisible:Q8LAT0
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009733GO:GO:0043565Gramene:AT3G01220.1hmmpanther:PTHR24326
hmmpanther:PTHR24326:SF264HOGENOM:HOG000006025InParanoid:Q8LAT0IntAct:Q8LAT0InterPro:IPR000047InterPro:IPR001356InterPro:IPR003106
InterPro:IPR009057InterPro:IPR017970KEGG:ath:AT3G01220KO:K09338ncoils:CoilOMA:THVNTIKPaxDb:Q8LAT0
Pfam:PF00046Pfam:PF02183Pfam:Q8LAT0Pfscan:PS50071PhylomeDB:Q8LAT0PRIDE:Q8LAT0PRINTS:PR00031
PRO:PR:Q8LAT0PROSITE:PS00027PROSITE:PS50071ProteinModelPortal:Q8LAT0Proteomes:UP000006548RefSeq:NP_186771.1scanprosite:PS00027
SMART:SM00389SMR:Q8LAT0STRING:3702.AT3G01220.1SUPFAM:SSF46689TAIR:AT3G01220tair10-symbols:ATHB20tair10-symbols:HB20
UniGene:At.41313UniProt:Q8LAT0
Coordinates (TAIR10) chr3:+:73599..75295
Molecular Weight (calculated) 33077.60 Da
IEP (calculated) 5.98
GRAVY (calculated) -0.94
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MYVFDPTTEA GLRLEMAFPQ HGFMFQQLHE DNSQDQLPSC PPHLFNGGGN YMMNRSMSLM NVQEDHNQTL DEENLSDDGA HTMLGEKKKR LQLEQVKALE
101: KSFELGNKLE PERKIQLAKA LGMQPRQIAI WFQNRRARWK TRQLERDYDS LKKQFESLKS DNASLLAYNK KLLAEVMALK NKECNEGNIV KREAEASWSN
201: NGSTENSSDI NLEMPRETIT THVNTIKDLF PSSIRSSAHD DDHHQNHEIV QEESLCNMFN GIDETTPAGY WAWSDPNHNH HHHQFN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)