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AT3G01180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : starch synthase 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
starch synthase 2 (SS2); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: cellulose biosynthetic process, glucan biosynthetic process, biosynthetic process, glycogen biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: Glycogen/starch synthases, ADP-glucose type (TAIR:AT5G24300.2); Has 15927 Blast hits to 11968 proteins in 3394 species: Archae - 233; Bacteria - 4788; Metazoa - 1175; Fungi - 1070; Plants - 4691; Viruses - 26; Other Eukaryotes - 3944 (source: NCBI BLink).
Protein Annotations
BioGrid:5628CAZy:GT5EC:2.4.1.21eggNOG:COG0297eggNOG:ENOG410IDXTEMBL:AC008261EMBL:AY054467
EMBL:BT002555EMBL:CP002686EnsemblPlants:AT3G01180EnsemblPlants:AT3G01180.1entrez:820294ExpressionAtlas:Q9MAC8GeneID:820294
Genevisible:Q9MAC8GO:GO:0004373GO:GO:0009011GO:GO:0009501GO:GO:0009507GO:GO:0010021GO:GO:0019252
GO:GO:0033201Gramene:AT3G01180.1gramene_plant_reactome:1119477gramene_plant_reactome:6875766HAMAP:MF_00484hmmpanther:PTHR12526hmmpanther:PTHR12526:SF337
HOGENOM:HOG000294940InParanoid:Q9MAC8IntAct:Q9MAC8InterPro:IPR001296InterPro:IPR011835InterPro:IPR013534iPTMnet:Q9MAC8
KEGG:00500+2.4.1.21KEGG:ath:AT3G01180KO:K00703OMA:SEVTYFHPaxDb:Q9MAC8PaxDb:W8QNS2Pfam:PF00534
Pfam:PF08323Pfam:Q9MAC8PhylomeDB:Q9MAC8PRIDE:Q9MAC8PRO:PR:Q9MAC8ProteinModelPortal:Q9MAC8Proteomes:UP000006548
RefSeq:NP_186767.1SMR:Q9MAC8STRING:3702.AT3G01180.1SUPFAM:SSF53756TAIR:AT3G01180tair10-symbols:AtSS2tair10-symbols:SS2
TIGRfam:TIGR02095TIGRFAMs:TIGR02095UniGene:At.18317UniPathway:UPA00152unipathway:UPA00164UniProt:Q9MAC8UniProt:W8QNS2
Coordinates (TAIR10) chr3:-:62456..65678
Molecular Weight (calculated) 87597.60 Da
IEP (calculated) 6.93
GRAVY (calculated) -0.42
Length 792 amino acids
Sequence (TAIR10)
(BLAST)
001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)