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AT3G01175.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.812
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1666)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1666); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1666) (TAIR:AT5G39785.2); Has 140 Blast hits to 138 proteins in 34 species: Archae - 0; Bacteria - 8; Metazoa - 4; Fungi - 7; Plants - 86; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJAUeggNOG:ENOG410YDXAEMBL:CP002686EnsemblPlants:AT3G01175
EnsemblPlants:AT3G01175.1entrez:820400GeneID:820400GO:GO:0003735
GO:GO:0005840GO:GO:0006412GO:GO:0016021Gramene:AT3G01175.1
hmmpanther:PTHR10759hmmpanther:PTHR10759:SF12InParanoid:F4J4Q8InterPro:IPR008195
InterPro:IPR012870KEGG:ath:AT3G01175OMA:CWLMIESPANTHER:PTHR10759
PaxDb:F4J4Q8Pfam:PF07891PRIDE:F4J4Q8Proteomes:UP000006548
RefSeq:NP_566134.1TAIR:AT3G01175TMHMM:TMhelixUniGene:At.41320
UniProt:F4J4Q8
Coordinates (TAIR10) chr3:+:59484..60845
Molecular Weight (calculated) 46958.70 Da
IEP (calculated) 4.44
GRAVY (calculated) -0.27
Length 401 amino acids
Sequence (TAIR10)
(BLAST)
001: MALLSACWLM IESIVIQDGF LKSSYMKLYM HPLVLFLCQL LIWLYLFFLW LLPPFQALYN AFSSVLFTFS KLVSSSFRVI MFKKEVTCHI ESRQEIKNTL
101: DNLELSTSTH NPVPAFSFSF KYQVDSHLKV RISMQKGKIL EEEEDVDDFF YEYDQEDVVE LLDAKEVEEE HDVDIFDGVN MEKNLEFEIQ TMPIHQEDEA
201: SLTNDDEEEE IVNSDVENDL SFLVSSKRDH PSPLSIASLD SALQDSVTIE NIQTQGVEDD HVYKKYCERM RWYDILSRDR SYGLNVITNQ LTASSLSLWG
301: KTAEKRIKQS MKKDLELVYV AQVCLSWEAL QHQYILVRDS SNPADSRGRF DDDISREFQN FQVLLERFLE DERCEGKRVL SFVQRRFELI SFFQVPRLSG
401: K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)