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AT3G01170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L34e superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L34e superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: Ribosomal protein L34e superfamily protein (TAIR:AT5G15260.1); Has 77 Blast hits to 76 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWGCeggNOG:ENOG4111QF9EMBL:AK175253EMBL:AK229300
EMBL:BT012180EMBL:CP002686EnsemblPlants:AT3G01170EnsemblPlants:AT3G01170.1
entrez:820469GeneID:820469GO:GO:0003735GO:GO:0005840
GO:GO:0006412GO:GO:0016021Gramene:AT3G01170.1hmmpanther:PTHR10759
hmmpanther:PTHR10759:SF8HOGENOM:HOG000238391InterPro:IPR008195KEGG:ath:AT3G01170
OMA:CDSTPMAPANTHER:PTHR10759PhylomeDB:Q6NLZ8Proteomes:UP000006548
RefSeq:NP_566133.1TAIR:AT3G01170TMHMM:TMhelixUniGene:At.21822
UniProt:Q6NLZ8
Coordinates (TAIR10) chr3:+:58043..58690
Molecular Weight (calculated) 23852.60 Da
IEP (calculated) 10.07
GRAVY (calculated) 0.10
Length 215 amino acids
Sequence (TAIR10)
(BLAST)
001: MVYLHSSISV CNSVDPMIMS HSSPKSRNTR NKSSSSPTCS KFPVCDGSQS AAIDVVILIA VITACGFLFF PYVKLITLKS IEVFSDLSLL VKQEILQNPI
101: VYGSLALSIF CAAISTWLVI LLCTMQRCGK PNCKGLRKAV EFDIQLETEE CVKSSSNKRG MFELPRVHHR ELEAELKKMA PPNGRAVLVF RARCGCSVRR
201: LVVSGPKKQQ RKIKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)