suba logo
AT3G01150.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : polypyrimidine tract-binding protein 1
Curator
Summary (TAIR10)
Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.
Computational
Description (TAIR10)
polypyrimidine tract-binding protein 1 (PTB1); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: pollen germination, regulation of RNA splicing, regulation of translation; LOCATED IN: nucleus, cytoplasmic mRNA processing body, cytoplasm; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: polypyrimidine tract-binding protein 2 (TAIR:AT5G53180.1); Has 1792 Blast hits to 964 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 1278; Fungi - 41; Plants - 303; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPMZeggNOG:KOG1190EMBL:AK316897EnsemblPlants:AT3G01150
EnsemblPlants:AT3G01150.1entrez:821129ExpressionAtlas:B9DFT7Gene3D:3.30.70.330
GeneID:821129GO:GO:0000166GO:GO:0003676Gramene:AT3G01150.1
hmmpanther:PTHR24012hmmpanther:PTHR24012:SF386InterPro:IPR000504InterPro:IPR012677
OMA:ASMAMSHPaxDb:B9DFT7Pfam:PF00076Pfam:PF13893
Pfam:Q9MAC5Pfscan:PS50102PhylomeDB:B9DFT7PRIDE:B9DFT7
PROSITE:PS50102ProteinModelPortal:B9DFT7RefSeq:NP_186764.1SMART:SM00360
SMR:B9DFT7STRING:3702.AT3G01150.1SUPFAM:SSF54928TAIR:AT3G01150
tair10-symbols:ATPTB1tair10-symbols:PTBtair10-symbols:PTB1UniGene:At.18320
UniProt:B9DFT7UniProt:Q9MAC5
Coordinates (TAIR10) chr3:+:51732..54344
Molecular Weight (calculated) 43595.20 Da
IEP (calculated) 6.90
GRAVY (calculated) -0.29
Length 399 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSGQTQFR YTQTPSKVVH LRNLPWECVE EELIDLCKRF GKIVNTKSNV GANRNQAFVE FADLNQAISM VSYYASSSEP AQIRGKTVYI QYSNRHEIVN
101: NQSPGDVPGN VLLVTFEGVE SHEVSIDVIH LVFSAFGFVH KIATFEKAAG FQALVQFTDV ETASAARSAL DGRSIPRYLL SAHVGSCSLR MSYSAHTDLN
201: IKFQSHRSRD YTNPYLPVNQ TAMDGSMQPA LGADGKKVES QSNVLLGLIE NMQYAVTVDV LHTVFSAYGT VQKIAIFEKN GSTQALIQYS DIPTAAMAKE
301: ALEGHCIYDG GYCKLRLSYS RHTDLNVKAF SDKSRDYTLP DLSLLVAQKG PAVSGSAPPA GWQNPQAQSQ YSGYGGSPYM YPSSDPNGAS PSGQPPYYG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)