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AT3G01140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 106
Curator
Summary (TAIR10)
Encodes a MIXTA-like MYB gene NOECK (NOK). Loss of function mutations show an increased number of branchpoints in leaf trichomes suggesting a role in negative regulation of trichome branching.
Computational
Description (TAIR10)
myb domain protein 106 (MYB106); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: trichome branching, regulation of transcription, DNA-dependent; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 16 (TAIR:AT5G15310.1); Has 8850 Blast hits to 8247 proteins in 477 species: Archae - 0; Bacteria - 0; Metazoa - 708; Fungi - 505; Plants - 5831; Viruses - 3; Other Eukaryotes - 1803 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:CP002686EnsemblPlants:AT3G01140EnsemblPlants:AT3G01140.1entrez:821209Gene3D:1.10.10.60
GeneID:821209GO:GO:0003677GO:GO:0003700GO:GO:0006355GO:GO:0010091Gramene:AT3G01140.1hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF604InParanoid:F4J2A8InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT3G01140KO:K09422
OMA:WIRQINCPaxDb:F4J2A8Pfam:PF00249Pfscan:PS51294PRIDE:F4J2A8PROSITE:PS51294ProteinModelPortal:F4J2A8
Proteomes:UP000006548RefSeq:NP_186763.2SMART:SM00717SMR:F4J2A8STRING:3702.AT3G01140.1SUPFAM:SSF46689TAIR:AT3G01140
tair10-symbols:AtMYB106tair10-symbols:MYB106tair10-symbols:NOKUniGene:At.69663UniProt:F4J2A8
Coordinates (TAIR10) chr3:-:46619..48143
Molecular Weight (calculated) 43560.20 Da
IEP (calculated) 8.56
GRAVY (calculated) -0.72
Length 388 amino acids
Sequence (TAIR10)
(BLAST)
001: MPIHVRDREK GRLQNLNRDI FCCVSPSIYQ SDAKRAAFVI ILIMIISPCC DKAGLKKGPW TPEEDQKLLA YIEEHGHGSW RSLPEKAGLQ RCGKSCRLRW
101: TNYLRPDIKR GKFTVQEEQT IIQLHALLGN RWSAIATHLP KRTDNEIKNY WNTHLKKRLI KMGIDPVTHK HKNETLSSST GQSKNAATLS HMAQWESARL
201: EAEARLARES KLLHLQHYQN NNNLNKSAAP QQHCFTQKTS TNWTKPNQGN GDQQLESPTS TVTFSENLLM PLGIPTDSSR NRNNNNNESS AMIELAVSSS
301: TSSDVSLVKE HEHDWIRQIN CGSGGIGEGF TSLLIGDSVG RGLPTGKNEA TAGVGNESEY NYYEDNKNYW NSILNLVDSS PSDSATMF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)