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AT3G01080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : WRKY DNA-binding protein 58
Curator
Summary (TAIR10)
member of WRKY Transcription Factor; Group I
Computational
Description (TAIR10)
WRKY DNA-binding protein 58 (WRKY58); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 3 (TAIR:AT2G03340.1); Has 5867 Blast hits to 3142 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 6; Plants - 5775; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Protein Annotations
EMBL:AC008261EMBL:AF426254EMBL:CP002686EnsemblPlants:AT3G01080EnsemblPlants:AT3G01080.1entrez:821213Gene3D:2.20.25.80
GeneID:821213Genevisible:Q93WU7GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0031347GO:GO:0043565
Gramene:AT3G01080.1hmmpanther:PTHR31221hmmpanther:PTHR31221:SF1HOGENOM:HOG000242409InParanoid:Q93WU7InterPro:IPR003657KEGG:ath:AT3G01080
OMA:GQMMESSPaxDb:Q93WU7Pfam:PF03106Pfam:Q93WU7Pfscan:PS50811PRIDE:Q93WU7PRO:PR:Q93WU7
PROSITE:PS50811ProteinModelPortal:Q93WU7Proteomes:UP000006548RefSeq:NP_186757.2SMART:SM00774SMR:Q93WU7STRING:3702.AT3G01080.1
SUPFAM:0050605SUPFAM:SSF118290TAIR:AT3G01080tair10-symbols:ATWRKY58tair10-symbols:WRKY58UniGene:At.26595UniProt:Q93WU7
Coordinates (TAIR10) chr3:+:25507..27449
Molecular Weight (calculated) 47132.60 Da
IEP (calculated) 8.24
GRAVY (calculated) -0.95
Length 423 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVEDDVSLI RTTTLVAPTR PTITVPHRPP AIETAAYFFG GGDGLSLSPG PLSFVSSLFV DNFPDVLTPD NQRTTSFTHL LTSPMFFPPQ SSAHTGFIQP
101: RQQSQPQPQR PDTFPHHMPP STSVAVHGRQ SLDVSQVDQR ARNHYNNPGN NNNNRSYNVV NVDKPADDGY NWRKYGQKPI KGCEYPRSYY KCTHVNCPVK
201: KKVERSSDGQ ITQIIYKGQH DHERPQNRRG GGGRDSTEVG GAGQMMESSD DSGYRKDHDD DDDDDEDDED LPASKIRRID GVSTTHRTVT EPKIIVQTKS
301: EVDLLDDGYR WRKYGQKVVK GNPHPRSYYK CTTPNCTVRK HVERASTDAK AVITTYEGKH NHDVPAARNG TAAATAAAVG PSDHHRMRSM SGNNMQQHMS
401: FGNNNNTGQS PVLLRLKEEK ITI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)