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AT3G01060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 640 Blast hits to 638 proteins in 201 species: Archae - 0; Bacteria - 293; Metazoa - 0; Fungi - 71; Plants - 72; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFMJeggNOG:ENOG410XNS0EMBL:AY093064EMBL:CP002686EnsemblPlants:AT3G01060EnsemblPlants:AT3G01060.1entrez:821278
ExpressionAtlas:Q8RWI4GeneID:821278GO:GO:0007623Gramene:AT3G01060.1hmmpanther:PTHR33835hmmpanther:PTHR33835:SF2InterPro:IPR025638
KEGG:ath:AT3G01060OMA:APTKECVPfam:PF14234PhylomeDB:Q8RWI4Proteomes:UP000006548RefSeq:NP_566129.1STRING:3702.AT3G01060.1
TAIR:AT3G01060UniGene:At.18324UniProt:Q8RWI4
Coordinates (TAIR10) chr3:-:16831..18782
Molecular Weight (calculated) 51027.30 Da
IEP (calculated) 10.56
GRAVY (calculated) -0.08
Length 455 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAAAMAVHL PKHSSFLPKP KLPLDKKTNF LGGSFNLGRP MSVNREFNSP VMVSASSTSK TVLTDDVDGD QSKRFYINFT GFPFPLGPFL NRRTIRTEAV
101: KGCIWMFEQE QALGFSSVST NIRMTVIKLK SGGLWVHAPI APTKECVQLI KELGAPVEYI VLPTFAYEHK IFVGPFSRKF PKAQVWVAPR QWSWPLNLPL
201: EFFGIFRAKI IKDRDLSTPW AEEIEQKVLS SPEVGIGPYV EVAFYHKRSR TLLVTDAVIF VPRKPPSSIS NESLLASAKN GLAVKILSKG KDIPNDPVVD
301: NPNTRQKGWE RMVLQILFLG PSNLLEPNAS FARMSQKLIV SPIVKTLVFS KVPEKVRDWI DEIARDWRFK RIIPAHFEAP INAGRSDFLA AFGFLEDLLG
401: ERYVTRPSLS LLFTSLMGKA ASYFPPDDMR TLSSLDQFLV SVGAVKKTVS GRKRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)