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AT2G48160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tudor/PWWP/MBT domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tudor/PWWP/MBT domain-containing protein; CONTAINS InterPro DOMAIN/s: RNA polymerase II, large subunit, CTD (InterPro:IPR006569), PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT domain-containing protein (TAIR:AT3G63070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZHF6eggNOG:KOG1904EMBL:AC006072EMBL:AK117393EMBL:CP002685EnsemblPlants:AT2G48160EnsemblPlants:AT2G48160.1
entrez:819428GeneID:819428Genevisible:F4IN78GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0006397
GO:GO:0009908Gramene:AT2G48160.1hmmpanther:PTHR12550hmmpanther:PTHR12550:SF5HOGENOM:HOG000176901InParanoid:F4IN78InterPro:IPR000313
InterPro:IPR006569iPTMnet:F4IN78KEGG:ath:AT2G48160PaxDb:F4IN78Pfam:F4IN78Pfam:PF00855Pfam:PF04818
Pfscan:PS50812Pfscan:PS51391PhylomeDB:F4IN78PIR:B84924PRIDE:F4IN78PRO:PR:F4IN78PROSITE:PS50812
PROSITE:PS51391ProteinModelPortal:F4IN78Proteomes:UP000006548RefSeq:NP_850485.2SMART:SM00293SMART:SM00582SMR:F4IN78
STRING:3702.AT2G48160.1SUPFAM:SSF63748TAIR:AT2G48160UniGene:At.27581UniProt:F4IN78
Coordinates (TAIR10) chr2:-:19689784..19696584
Molecular Weight (calculated) 149675.00 Da
IEP (calculated) 5.19
GRAVY (calculated) -0.78
Length 1366 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAPSRRKGGG RAAAVAAACR KRKVGDLVLA KVKGFPAWPA VVSEPEKWDA SPDSKKVFVH FFGTQQIAFC NPGDVEAFTE ERKQSLLTRR HAKGSDFVRA
0101: VKEIIESYEK LKQQERASDP KSAEEGTLGS AENTTLMPQV IEIPTATSLT QMNSDPSHGR DESTLLNEDA SAAEQMLALR DNSGPRNKAC DSAVVKEPRK
0201: IATYSSRKRN GGVRSQNCAP QNETCPVQRS KSPSRLQTEK LQSSMLQNSD GGQTIDDVED GALRREKRIR RSSGHSESDD VATSSLNSHG SDEENASEIA
0301: TVESDNNRNE GNGVDSGSKV EQIDIGGKFL EGDYDLNKGL NFQINIMVKR KKRKPTRKRG TSDVVDPQAK VEGEAVPEAG ARNNVQTSQN SHEKFTERPC
0401: EENGDEHLPL VKRARVRMSR AFYGNHEANS SLQAEERSPK DTVVSATAQT SPSDIISSHD TFAVEESKFF EVSAKLSGDM VNVAPSPVEK SHDGMSPSEA
0501: CVQTVREREY AMGWNELSKT PDDKSAGPQY NQVSSLPAGE AQTASVPEAV CPEVLKLLTS ESDLPAVQYC QVAKIEPSMD PNTVDSSANN ASEICSLSIP
0601: SQLSGQDRSN DQDACVSLEN SREYLNEEGS KIDACVAQVV QSEAIEHSPS SCLVVNKQET ENMPKTVNML LKEGHGSLGE ECAIVEPAQC TPNLPISATE
0701: SDVIVGENVP LNEIGCTKCE DAVEDSRQLK MIGETNDQKQ QVQTNNSVLV SENLSREKMS FSPAITADTP ARGTPHSSSV YYHISTSESA NDMQNNSSGS
0801: PNIPTGEKKN DCDAIVKEEE KIETGVCQGQ KVVSCDVQST RESYEDALCS LVRTKESIGR ATCLAMDLMK FGVSAKAMEI LAHTLESESN LKRRVDLFFL
0901: VDSIAQCSKG LKGDTGCVYL SAIQVILPRL LAAAVPAGAT TQENRKQCLK VLKLWLERRI LPESIVRHHI RELDSHSIVP ACLYSRRSAR TERSLDDPVR
1001: DMEDMLVDEY GSNSTLQLPG FCMPALLKDE EGGSDSEGGC DSEGGSDSDG GDFESVTPEH ESRILEENVS SSTAERHTLI LEDVDGELEM EDVAPPWGTE
1101: NCTHTDQADN TKVSNCQLGQ QHRPVFGTSH QHMSLSSPPL PSSSPPPPPA PPSQQGECAM PDSYLNGFEN GGYRNVHGDQ QAGPLRMNPP LSGSTMHYQG
1201: PESSYISGVQ LTNSIPQADG SNFQHRPYPS HPHPHPPPPP PPPQHQFSFR EPGHVLKSHR DAPSYSHRSH YVPNCDERNF HDNHERMRHA PFENRDNWRY
1301: PPSSSYGSRY QDEHKAPYPS SSYNGVRWDN PPRQYNNRPS FHPKPHSEGP APVGMRDPGM WHQRSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)