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AT2G48100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Exonuclease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1569 Blast hits to 1569 proteins in 234 species: Archae - 0; Bacteria - 15; Metazoa - 734; Fungi - 438; Plants - 246; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0847eggNOG:KOG2249EMBL:AC006072EMBL:AF386965EMBL:AY081469EMBL:CP002685EnsemblPlants:AT2G48100
EnsemblPlants:AT2G48100.1EnsemblPlants:AT2G48100.2EnsemblPlants:AT2G48100.3entrez:819422ExpressionAtlas:Q9ZU79Gene3D:3.30.420.10GeneID:819422
GO:GO:0003676GO:GO:0004527GO:GO:0046872Gramene:AT2G48100.1Gramene:AT2G48100.2Gramene:AT2G48100.3hmmpanther:PTHR12801
hmmpanther:PTHR12801:SF66InterPro:IPR007087InterPro:IPR012337InterPro:IPR013520InterPro:IPR015880KEGG:ath:AT2G48100OMA:CKSFESV
Pfam:PF00929Pfscan:PS50157PhylomeDB:Q9ZU79PIR:D84923PROSITE:PS00028PROSITE:PS50157Proteomes:UP000006548
RefSeq:NP_001031560.1RefSeq:NP_566124.1RefSeq:NP_973715.1scanprosite:PS00028SMART:SM00355SMART:SM00479SMR:Q9ZU79
STRING:3702.AT2G48100.1SUPFAM:SSF53098TAIR:AT2G48100UniGene:At.13478UniProt:Q9ZU79
Coordinates (TAIR10) chr2:+:19671245..19672847
Molecular Weight (calculated) 39123.20 Da
IEP (calculated) 8.41
GRAVY (calculated) -0.54
Length 344 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSQLNPSKR RKISVRHRCV ACYKMFNRRE HLVEHMKISY HSLHQPRCGV CLKHCKSFES VREHLNVPDH LSKGNCKAIF TKRGCTLCLQ IFEEAFALAE
101: HKNKCHLSPP RPLGTSTQRN PSSSLAGSRL KAMALDCEMV GGGADGTIDQ CASVCLVDDD ENVIFSTHVQ PLLPVTDYRH EITGLTKEDL KDGMPLEHVR
201: ERVFSFLCGG QNDGAGRLLL VGHDLRHDMS CLKLEYPSHL LRDTAKYVPL MKTNLVSQSL KYLTKSYLGY KIQCGKHEVY EDCVSAMRLY KRMRDQEHVC
301: SGKAEGNGLN SRKQSDLEKM NAEELYQKST SEYRCWCLDR LSNP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)