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AT2G48020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G18840.1); Has 32576 Blast hits to 32035 proteins in 2204 species: Archae - 531; Bacteria - 16009; Metazoa - 5272; Fungi - 6662; Plants - 2708; Viruses - 2; Other Eukaryotes - 1392 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNQKeggNOG:KOG0254EMBL:AC006072EMBL:AY084684EMBL:AY120715EMBL:BT000053EMBL:CP002685
EMBL:Z84202EnsemblPlants:AT2G48020EnsemblPlants:AT2G48020.1EnsemblPlants:AT2G48020.2entrez:819414GeneID:819414Genevisible:P93051
GO:GO:0005351GO:GO:0005355GO:GO:0005773GO:GO:0005774GO:GO:0005887GO:GO:0006829GO:GO:0009507
GO:GO:0009705GO:GO:0015992GO:GO:0035428GO:GO:0046323GO:GO:1904659Gramene:AT2G48020.1Gramene:AT2G48020.2
hmmpanther:PTHR23500hmmpanther:PTHR23500:SF112HOGENOM:HOG000202868InParanoid:P93051InterPro:IPR003663InterPro:IPR005828InterPro:IPR005829
InterPro:IPR020846KEGG:ath:AT2G48020ncoils:CoilOMA:VGIMVYIPaxDb:P93051Pfam:P93051Pfam:PF00083
Pfscan:PS50850PhylomeDB:P93051PIR:D84922PRIDE:P93051PRINTS:PR00171PRO:PR:P93051PROSITE:PS00216
PROSITE:PS50850ProteinModelPortal:P93051Proteomes:UP000006548Reactome:R-ATH-428790RefSeq:NP_566120.1RefSeq:NP_850483.1scanprosite:PS00216
SMR:P93051STRING:3702.AT2G48020.1SUPFAM:SSF103473TAIR:AT2G48020TIGRfam:TIGR00879TIGRFAMs:TIGR00879TMHMM:TMhelix
UniGene:At.13473UniProt:P93051
Coordinates (TAIR10) chr2:+:19644441..19647007
Molecular Weight (calculated) 49702.70 Da
IEP (calculated) 8.96
GRAVY (calculated) 0.74
Length 463 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKASDAVRE PLVDKNMAGS KPDQPWMVYL STFVAVCGSF AFGSCAGYSS PAQAAIRNDL SLTIAEFSLF GSLLTFGAMI GAITSGPIAD LVGRKGAMRV
101: SSAFCVVGWL AIIFAKGVVA LDLGRLATGY GMGAFSYVVP IFIAEIAPKT FRGALTTLNQ ILICTGVSVS FIIGTLVTWR VLALIGIIPC AASFLGLFFI
201: PESPRWLAKV GRDTEFEAAL RKLRGKKADI SEEAAEIQDY IETLERLPKA KMLDLFQRRY IRSVLIAFGL MVFQQFGGIN GICFYTSSIF EQAGFPTRLG
301: MIIYAVLQVV ITALNAPIVD RAGRKPLLLV SATGLVIGCL IAAVSFYLKV HDMAHEAVPV LAVVGIMVYI GSFSAGMGAM PWVVMSEIFP INIKGVAGGM
401: ATLVNWFGAW AVSYTFNFLM SWSSYGTFLI YAAINALAIV FVIAIVPETK GKTLEQIQAI VNP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)