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AT2G47930.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : arabinogalactan protein 26
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
arabinogalactan protein 26 (AGP26); Has 1583 Blast hits to 406 proteins in 105 species: Archae - 2; Bacteria - 56; Metazoa - 101; Fungi - 52; Plants - 160; Viruses - 60; Other Eukaryotes - 1152 (source: NCBI BLink).
Protein Annotations
BioGrid:4740eggNOG:ENOG410JTQ2eggNOG:ENOG41107NAEMBL:AC005309EMBL:AC006072EMBL:AF385686EMBL:AY078007
EMBL:CP002685EnsemblPlants:AT2G47930EnsemblPlants:AT2G47930.1entrez:819405GeneID:819405Genevisible:Q94F57GO:GO:0005886
GO:GO:0031225GO:GO:0080167Gramene:AT2G47930.1hmmpanther:PTHR35725hmmpanther:PTHR35725:SF1HOGENOM:HOG000033856InParanoid:Q94F57
IntAct:Q94F57KEGG:ath:AT2G47930OMA:PSESSIMPaxDb:Q94F57Pfam:Q94F57PIR:C84921PRO:PR:Q94F57
ProteinModelPortal:Q94F57Proteomes:UP000006548RefSeq:NP_566114.1STRING:3702.AT2G47930.1TAIR:AT2G47930tair10-symbols:AGP26tair10-symbols:ATAGP26
TMHMM:TMhelixUniGene:At.12951UniProt:Q94F57
Coordinates (TAIR10) chr2:-:19617219..19617629
Molecular Weight (calculated) 13983.80 Da
IEP (calculated) 3.42
GRAVY (calculated) 0.56
Length 136 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVSLFTAFT VLSLCLHTST SEFQLSTISA APSFLPEAPS SFSASTPAMS PDTSPLFPTP GSSEMSPSPS ESSIMPTIPS SLSPPNPDAV TPDPLLEVSP
101: VGSPLPASSS VCLVSSQLSS LLLVLLMLLL AFCSFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)