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AT2G47900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tubby like protein 3
Curator
Summary (TAIR10)
Member of TLP family
Computational
Description (TAIR10)
tubby like protein 3 (TLP3); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 5 (TAIR:AT1G43640.1); Has 958 Blast hits to 953 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 352; Fungi - 19; Plants - 470; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
Protein Annotations
BioGrid:4737eggNOG:ENOG410XQFTeggNOG:KOG2502EMBL:AC005309
EMBL:AC006072EMBL:AY045774EMBL:AY074273EMBL:AY096604
EMBL:CP002685EnsemblPlants:AT2G47900EnsemblPlants:AT2G47900.1EnsemblPlants:AT2G47900.2
entrez:819402ExpressionAtlas:Q8VY21Gene3D:3.20.90.10GeneID:819402
Genevisible:Q8VY21GO:GO:0005654GO:GO:0005886GO:GO:0009536
hmmpanther:PTHR16517hmmpanther:PTHR16517:SF34HOGENOM:HOG000238161InParanoid:Q8VY21
InterPro:IPR000007InterPro:IPR001810InterPro:IPR025659KEGG:ath:AT2G47900
MINT:MINT-8060175PaxDb:Q8VY21Pfam:PF00646Pfam:PF01167
Pfam:Q8VY21PhylomeDB:Q8VY21PIR:H84920PRIDE:Q8VY21
PRINTS:PR01573PRO:PR:Q8VY21ProteinModelPortal:Q8VY21Proteomes:UP000006548
RefSeq:NP_001031558.1RefSeq:NP_001189775.1RefSeq:NP_850481.1SMR:Q8VY21
STRING:3702.AT2G47900.3SUPFAM:SSF54518TAIR:AT2G47900tair10-symbols:AtTLP3
tair10-symbols:TLP3UniGene:At.27566UniGene:At.67233UniProt:Q8VY21
Coordinates (TAIR10) chr2:-:19611196..19612766
Molecular Weight (calculated) 45314.20 Da
IEP (calculated) 9.77
GRAVY (calculated) -0.34
Length 406 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAASNDD GKFLLAAKRF RRPTCTDYII SLNCDDVSRG SNTYIGKLRS NFLGTKFTVY
201: DAQPTNPGTQ VTRTRSSRLL SLKQVSPRIP SGNYPVAHIS YELNVLGSRG PRRMQCVMDA IPASAVEPGG TAPTQTELVH SNLDSFPSFS FFRSKSIRAE
301: SLPSGPSSAA QKEGLLVLKN KAPRWHEQLQ CWCLNFNGRV TVASVKNFQL VAAPENGPAG PEHENVILQF GKVGKDVFTM DYQYPISAFQ AFTICLSSFD
401: TKIACE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)