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AT2G47890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : B-box type zinc finger protein with CCT domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 3246 Blast hits to 2264 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3153; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKQWeggNOG:ENOG410YGKNEMBL:AB493598EnsemblPlants:AT2G47890EnsemblPlants:AT2G47890.1entrez:819401ExpressionAtlas:C0SV95
GeneID:819401Genevisible:O82256GO:GO:0005622GO:GO:0008270Gramene:AT2G47890.1hmmpanther:PTHR31717hmmpanther:PTHR31717:SF16
HOGENOM:HOG000240051InterPro:IPR000315InterPro:IPR010402KEGG:ath:AT2G47890OMA:STCELESPaxDb:C0SV95Pfam:O82256
Pfam:PF00643Pfam:PF06203Pfscan:PS50119Pfscan:PS51017PhylomeDB:C0SV95PRIDE:C0SV95PRIDE:O82256
PROSITE:PS50119PROSITE:PS51017RefSeq:NP_182310.1SMART:SM00336STRING:3702.AT2G47890.1TAIR:AT2G47890UniGene:At.12948
UniProt:C0SV95UniProt:O82256
Coordinates (TAIR10) chr2:+:19608245..19609476
Molecular Weight (calculated) 37512.10 Da
IEP (calculated) 5.97
GRAVY (calculated) -0.57
Length 332 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAEEGHQRD RLCDYCDSSV ALVYCKADSA KLCLACDKQV HVANQLFAKH FRSLLCDSCN ESPSSLFCET ERSVLCQNCD WQHHTASSSL HSRRPFEGFT
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)