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AT2G47860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G03010.1); Has 884 Blast hits to 856 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 876; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSQMeggNOG:ENOG41108KDEMBL:AC005309EMBL:AC006072
EMBL:CP002685EnsemblPlants:AT2G47860EnsemblPlants:AT2G47860.1entrez:819398
ExpressionAtlas:O82253GeneID:819398Genevisible:O82253GO:GO:0016567
hmmpanther:PTHR32370hmmpanther:PTHR32370:SF30HOGENOM:HOG000239180InParanoid:O82253
InterPro:IPR000210InterPro:IPR011333InterPro:IPR027356iPTMnet:O82253
ncoils:CoilPaxDb:O82253Pfam:O82253Pfam:PF00651
Pfam:PF03000Pfscan:PS51649PhylomeDB:O82253PIR:D84920
PRIDE:O82253PRO:PR:O82253PROSITE:PS51649ProteinModelPortal:O82253
Proteomes:UP000006548RefSeq:NP_182307.1SUPFAM:SSF54695TAIR:AT2G47860
UniGene:At.43938UniPathway:UPA00143UniProt:O82253
Coordinates (TAIR10) chr2:+:19599979..19602088
Molecular Weight (calculated) 71002.10 Da
IEP (calculated) 8.84
GRAVY (calculated) -0.31
Length 635 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVVTVPESN KQSVAAKRAF RPSSSIRHTP QWPVSDVTSD LTIEVGSATF SLHKFPLVSR SGRIRKLVLE SKDTNLNLAA VPGGSESFEL AAKFCYGVGV
101: QYNSSNIAAL RCVAHYLEMT EDLSEKNLEA RTEAYLKDSI FNDISNSITV LHSCERLLPV AEEINLVGRL VNAIAVNACK EQLASGLLKL DQSFSCGVPE
201: TAKPCDWWGR SLPILKLDFF QRVLSAMKSK GLNHDIISDI LMSYARKSLQ IIREPNLVKS DSDLQRKQRI VLEAVVGLLP TQANKSSIPI SFLSSLLKTA
301: IGSGTSVSCR SDLERRISHL LDQAILEDIL IPANIGAMYD TDSVQRIFSM FLNLDECEYR DDDDDEEDAV DESEMAMYDF EGAESPKQSS IFKVSKLMDS
401: YLAEVALDSS LPPSKFIALA ELLPDHARVV CDGLYRAVDI FLKVHPHMKD SERYRLCKTV SCKKLSQDAS SHAAQNERLP VQIAVQVLFY EQTRLKNAMT
501: SGGGTGGSNQ SQFFLFPNRS GSGMASGAIS PRDNYASVRR ENRELRLEVA RMRMRLTDLE KDHVSMKRDF VKPQSRRRRY GMLRKLSRGL NKLNAIVLRF
601: RSSQSVASSG KKHTEEKTNS ERRFMFQKRR CHSVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)