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AT2G47850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 1724 Blast hits to 1003 proteins in 159 species: Archae - 0; Bacteria - 7; Metazoa - 368; Fungi - 218; Plants - 971; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5063eggNOG:KOG1677EMBL:AC005309EMBL:BT004106
EMBL:BT030391EMBL:CP002685EnsemblPlants:AT2G47850EnsemblPlants:AT2G47850.1
EnsemblPlants:AT2G47850.3entrez:819397ExpressionAtlas:Q84W91Gene3D:4.10.1000.10
GeneID:819397Genevisible:Q84W91GO:GO:0003677GO:GO:0005634
GO:GO:0046872hmmpanther:PTHR12506hmmpanther:PTHR12506:SF19HOGENOM:HOG000237733
InParanoid:Q84W91InterPro:IPR000571OMA:GGSMSHVPaxDb:Q84W91
Pfam:PF00642Pfam:Q84W91Pfscan:PS50103PhylomeDB:Q84W91
PIR:C84920PRIDE:Q84W91PRO:PR:Q84W91PROSITE:PS50103
ProteinModelPortal:Q84W91Proteomes:UP000006548RefSeq:NP_001078078.1RefSeq:NP_182306.2
SMART:SM00356SMR:Q84W91STRING:3702.AT2G47850.1SUPFAM:SSF90229
TAIR:AT2G47850UniGene:At.21006UniProt:Q84W91
Coordinates (TAIR10) chr2:+:19595953..19598119
Molecular Weight (calculated) 50043.20 Da
IEP (calculated) 8.84
GRAVY (calculated) -0.39
Length 468 amino acids
Sequence (TAIR10)
(BLAST)
001: MYARNPPLNG SQSAQAPDWT PADADTGLQE SMWRLGLGSD SYPERPGAPD CAYYMRTGVC GYGNRCRYNH PRDRASVEAT VRATGQYPER FGEPPCQFYL
101: KTGTCKFGAS CKFHHPKNAG GSMSHVPLNI YGYPVREGDN ECSYYLKTGQ CKFGITCKFH HPQPAGTTVP PPPASAPQFY PSVQSLMPDQ YGGPSSSLRV
201: ARTLLPGSYM QGAYGPMLLT PGVVPIPGWS PYSAPVSPAL SPGAQHAVGA TSLYGVTQLT STTPSLPGVY PSLSSPTGVI QKEQAFPERP GEPECQYYLK
301: TGDCKFGTSC KFHHPRDRVP PRANCVLSPI GLPLRPGVQR CTFYVQNGFC KFGSTCKFDH PMGTIRYNPS ASSLADAPVA PYPVSSLLGA LAAAPSSSST
401: ELIAGGAKDA YMTGVPTSRS TSNISAGLIF SQSGGSIPFS ELQLSSQSSL PLTGSRITRQ GREIRRSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)