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AT2G47790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 11741 Blast hits to 7668 proteins in 457 species: Archae - 10; Bacteria - 2663; Metazoa - 3454; Fungi - 3073; Plants - 916; Viruses - 0; Other Eukaryotes - 1625 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZUMDeggNOG:KOG1188EMBL:AC005309EMBL:AF424569
EMBL:BT000571EMBL:CP002685EnsemblPlants:AT2G47790EnsemblPlants:AT2G47790.1
entrez:819391Gene3D:2.130.10.10GeneID:819391GO:GO:0010029
GO:GO:0040008Gramene:AT2G47790.1hmmpanther:PTHR22889HOGENOM:HOG000029484
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986KEGG:ath:AT2G47790
OMA:QNRGIFGPfam:PF00400Pfscan:PS50082Pfscan:PS50294
PhylomeDB:Q944S2PIR:E84919PROSITE:PS50082PROSITE:PS50294
Proteomes:UP000006548RefSeq:NP_566111.1SMART:SM00320SMR:Q944S2
STRING:3702.AT2G47790.1SUPFAM:SSF50978TAIR:AT2G47790UniGene:At.48607
UniGene:At.70188UniProt:Q944S2
Coordinates (TAIR10) chr2:-:19571102..19572946
Molecular Weight (calculated) 43067.90 Da
IEP (calculated) 4.53
GRAVY (calculated) -0.39
Length 392 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEVSSEMEV EVQNRQLSDS SPAQNVKKFG LKNSIQTNFG SDYVFQIVPK IDWTAIAVSL STNTVKLYSP VTGQYYGECK GHSDTVNQIA FSSDSAASPH
101: VLHSCSSDGT IRSWDTRSFQ QVSRIDTGND QEIFSFSYGG AADNLLAGGC KEQVLLWDWR NSKQVACLEE SHMDDVTQVH FVPNKPNKLL SASVDGLICL
201: FNTEGDINDD DHLESVINVG TSIGKIGFLG DGYKKLWCLT HIETLSIWNW EDGSCEVNLE KARELASDSW TQDNVDYFVD CHCPGGEDLW VIGGTCAGTV
301: GYFPVNYKQP GSIGTAEAIL GGGHIDVVRS VLQMPGEYGG AAGLFGWTGG EDGRLCCWKS DEDATEINRS WTSSELVVKP PRNRKKNRHS PY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)