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AT2G47780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rubber elongation factor protein (REF)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Rubber elongation factor protein (REF); CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: Rubber elongation factor protein (REF) (TAIR:AT3G05500.1); Has 126 Blast hits to 126 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFI1eggNOG:ENOG4111R2EEMBL:AC005309EMBL:BT000468EMBL:BT002146EMBL:CP002685EnsemblPlants:AT2G47780
EnsemblPlants:AT2G47780.1entrez:819390GeneID:819390Genevisible:O82246Gramene:AT2G47780.1hmmpanther:PTHR33732hmmpanther:PTHR33732:SF1
HOGENOM:HOG000029051InParanoid:O82246InterPro:IPR008802KEGG:ath:AT2G47780OMA:AEYLPMIPaxDb:O82246Pfam:O82246
Pfam:PF05755PhylomeDB:O82246PIR:D84919PRIDE:O82246PRO:PR:O82246ProteinModelPortal:O82246Proteomes:UP000006548
RefSeq:NP_182299.1TAIR:AT2G47780UniGene:At.48607UniGene:At.70188UniProt:O82246
Coordinates (TAIR10) chr2:+:19570076..19570864
Molecular Weight (calculated) 26643.50 Da
IEP (calculated) 4.17
GRAVY (calculated) -0.14
Length 235 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEDEIVVEE EQSQPQEITP VPPSSSSSPS LVVEDDDEMK LKHLEFIQVA AVYFAACFST LYELAKDNAG PLKLGVENIE DCVRTVLAPL YEKFHDVPFK
101: LLLFVDRKVD DVFFDVETYV PSLVKQASSQ ALTVATEVQR TGVVDTTKSI ARSVRDKYEP AAEYYAATLW RLLNQLPLFP EVAHLVIPTA FYWSEKYNDA
201: VRYVGDRDYF GAEYLPMIPI EKISDILEQD QCRAD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)