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AT2G47770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.500
golgi 0.500
ASURE: endoplasmic reticulum,golgi
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TSPO(outer membrane tryptophan-rich sensory protein)-related
Curator
Summary (TAIR10)
Encodes a membrane-bound protein designated AtTSPO (Arabidopsis thaliana TSPO-related). AtTSPO is related to the bacterial outer membrane tryptophan-rich sensory protein (TspO) and the mammalian mitochondrial 18 kDa Translocator Protein (18 kDa TSPO), members of the TspO/MBR domain-containing membrane proteins. Mainly detected in dry seeds, but can be induced in vegetative tissues by osmotic or salt stress or abscisic acid treatment. Located in endoplasmic reticulum and the Golgi stacks.
Computational
Description (TAIR10)
TSPO(outer membrane tryptophan-rich sensory protein)-related (TSPO); CONTAINS InterPro DOMAIN/s: TspO/MBR-related protein (InterPro:IPR004307); Has 567 Blast hits to 567 proteins in 188 species: Archae - 24; Bacteria - 226; Metazoa - 151; Fungi - 6; Plants - 53; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Protein Annotations
BioGrid:4724eggNOG:ENOG410IXPKeggNOG:ENOG410YY8XEMBL:AC005309EMBL:AF428356EMBL:AY045981EMBL:AY079391
EMBL:CP002685EnsemblPlants:AT2G47770EnsemblPlants:AT2G47770.1entrez:819389GeneID:819389Genevisible:O82245GO:GO:0000139
GO:GO:0005783GO:GO:0005789GO:GO:0005794GO:GO:0005795GO:GO:0006778GO:GO:0006810GO:GO:0006970
GO:GO:0009651GO:GO:0009737GO:GO:0016020GO:GO:0016021GO:GO:0020037GO:GO:0031969Gramene:AT2G47770.1
hmmpanther:PTHR10057hmmpanther:PTHR10057:SF0HOGENOM:HOG000077445InParanoid:O82245IntAct:O82245InterPro:IPR004307KEGG:ath:AT2G47770
OMA:GDLVKPCPANTHER:PTHR10057PaxDb:O82245Pfam:O82245Pfam:PF03073PhylomeDB:O82245PIR:C84919
PRIDE:O82245PRO:PR:O82245ProteinModelPortal:O82245Proteomes:UP000006548RefSeq:NP_566110.1SMR:O82245STRING:3702.AT2G47770.1
TAIR:AT2G47770tair10-symbols:ATTSPOtair10-symbols:TSPOTCDB:9.A.24.1.3TMHMM:TMhelixUniGene:At.23206UniProt:O82245
Coordinates (TAIR10) chr2:+:19568701..19569291
Molecular Weight (calculated) 21063.50 Da
IEP (calculated) 9.64
GRAVY (calculated) 0.22
Length 196 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSQDIRYRG GDDRDAATTA MAETERKSAD DNKGKRDQKR AMAKRGLKSL TVAVAAPVLV TLFATYFLGT SDGYGNRAKS SSWIPPLWLL HTTCLASSGL
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)