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AT2G47650.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
golgi 0.500
vacuole 0.500
ASURE: golgi,vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): Golgi
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : UDP-xylose synthase 4
Curator
Summary (TAIR10)
encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational
Description (TAIR10)
UDP-xylose synthase 4 (UXS4); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: nucleotide-sugar metabolic process, D-xylose metabolic process; LOCATED IN: Golgi apparatus, plasma membrane, vacuole, membrane; EXPRESSED IN: cotyledon, male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2); Has 44652 Blast hits to 44610 proteins in 2978 species: Archae - 851; Bacteria - 26010; Metazoa - 746; Fungi - 333; Plants - 1297; Viruses - 49; Other Eukaryotes - 15366 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1127-MONOMEREC:4.1.1.35eggNOG:COG0451eggNOG:KOG1429
EMBL:AC002535EMBL:AK316734EMBL:BT022016EMBL:CP002685
EnsemblPlants:AT2G47650EnsemblPlants:AT2G47650.1entrez:819378ExpressionAtlas:Q8S8T4
Gene3D:3.40.50.720GeneID:819378Genevisible:Q8S8T4GO:GO:0016021
GO:GO:0032580GO:GO:0033320GO:GO:0048040gramene_pathway:4.1.1.35
gramene_pathway:PWY-4821hmmpanther:PTHR10366hmmpanther:PTHR10366:SF465HOGENOM:HOG000168004
InParanoid:Q8S8T4InterPro:IPR016040PaxDb:Q8S8T4Pfam:PF16363
Pfam:Q8S8T4PhylomeDB:Q8S8T4PIR:T00419PRIDE:Q8S8T4
PRO:PR:Q8S8T4ProteinModelPortal:Q8S8T4Proteomes:UP000006548RefSeq:NP_182287.1
SMR:Q8S8T4STRING:3702.AT2G47650.2SUPFAM:SSF51735TAIR:AT2G47650
tair10-symbols:UXS4TMHMM:TMhelixUniGene:At.27002UniGene:At.36335
UniGene:At.71501UniPathway:UPA00796UniProt:Q8S8T4
Coordinates (TAIR10) chr2:-:19538751..19541364
Molecular Weight (calculated) 49948.30 Da
IEP (calculated) 9.27
GRAVY (calculated) -0.34
Length 443 amino acids
Sequence (TAIR10)
(BLAST)
001: MASELTNRRH EIEQPEAESY YPKPIKPWFV AIRPIRYMLR EQRLVFVLVG IAIATLGFTI FSKSSNHQPI PYDVDPLSGY GMRSESSYLP ATIHKKPSIE
101: YMSRIGSAGG KIPLGLKRKV LRVVVTGGAG FVGSHLVDRL MARGDNVIVV DNFFTGRKEN VMHHFNNPNF EMIRHDVVEP ILLEVDQIYH LACPASPVHY
201: KFNPVKTIKT NVVGTLNMLG LAKRVGARFL LTSTSEVYGD PLQHPQVETY WGNVNPIGVR SCYDEGKRTA ETLTMDYHRG ANVEVRIARI FNTYGPRMCI
301: DDGRVVSNFV AQALRKEPLT VYGDGKQTRS FQFVSDLVEG LMRLMEGEHV GPFNLGNPGE FTMLELAKVV QETIDPNAKI EFRPNTEDDP HKRKPDITKA
401: KELLGWEPKV ALRQGLPLMV KDFRQRVFGD QKQDSSTTSS STE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)