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AT2G47590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : photolyase/blue-light receptor 2
Curator
Summary (TAIR10)
photolyase/blue light photoreceptor PHR2 (PHR2) mRNA,
Computational
Description (TAIR10)
photolyase/blue-light receptor 2 (PHR2); FUNCTIONS IN: DNA photolyase activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101); BEST Arabidopsis thaliana protein match is: cryptochrome 3 (TAIR:AT5G24850.1); Has 4854 Blast hits to 4851 proteins in 1205 species: Archae - 82; Bacteria - 2283; Metazoa - 348; Fungi - 105; Plants - 417; Viruses - 0; Other Eukaryotes - 1619 (source: NCBI BLink).
Protein Annotations
BioGrid:4707eggNOG:COG0415eggNOG:KOG0133EMBL:AC002535
EMBL:AF053366EMBL:AY087383EMBL:CP002685EnsemblPlants:AT2G47590
EnsemblPlants:AT2G47590.1entrez:819372ExpressionAtlas:Q8LB72Gene3D:3.40.50.620
GeneID:819372Genevisible:Q8LB72GO:GO:0009881GO:GO:0018298
Gramene:AT2G47590.1hmmpanther:PTHR11455hmmpanther:PTHR11455:SF2HOGENOM:HOG000240044
InParanoid:Q8LB72InterPro:IPR005101InterPro:IPR006050InterPro:IPR014729
KEGG:ath:AT2G47590OMA:LMYELLWPaxDb:Q8LB72Pfam:PF00875
Pfam:PF03441Pfam:Q8LB72Pfscan:PS51645PhylomeDB:Q8LB72
PIR:T00425PRIDE:Q8LB72PRO:PR:Q8LB72PROSITE:PS51645
ProteinModelPortal:Q8LB72Proteomes:UP000006548RefSeq:NP_182281.1SMR:Q8LB72
STRING:3702.AT2G47590.1SUPFAM:SSF48173SUPFAM:SSF52425TAIR:AT2G47590
tair10-symbols:PHR2UniGene:At.10721UniGene:At.69338UniProt:Q058P5
UniProt:Q8LB72
Coordinates (TAIR10) chr2:+:19521888..19523732
Molecular Weight (calculated) 48881.00 Da
IEP (calculated) 8.13
GRAVY (calculated) -0.31
Length 447 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSSNVEENL NPETKSAEEQ NPLAIFHSSL PIASLSLTLF PSSTQFLKLF AHHPNKVKIP TQASSLTHLS LSSVSPFPSS RISFKSTIAA NPLQSPLSIV
101: PRRPVDPSSA AALRRAAVVW FRNDLRVHDN ECLNSANDEC VSVLPVYCFD PRDYGKSSSG FDKTGPFRAQ FLIESVSELR KNLQARGSNL VVRVGKPEAV
201: LVELAKEIGA DAVYAHREVS HDEVKAEGKI ETAMKEEGVE VKYFWGSTLY HLDDLPFKIE DLPSNYGAFK DKVQKLEIRK TIAALDQLKS LPSRGDVELG
301: DIPSLLDLGI SPTPRTSQEG KPTMVGGETE ALTRLKSFAA DCQARLSKGN QKGGNNSVFG ANFSCKISPW LAMGSISPRS MFDELKKTIS ASTTSTTPRN
401: GPGDTGLNWL MYELLWRDFF RFITKKYSSA KTQVEAGPAT ACTGAFA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)