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AT2G47540.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pollen Ole e 1 allergen and extensin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: root hair specific 13 (TAIR:AT4G02270.1); Has 149 Blast hits to 149 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:819367eggNOG:ENOG410J17DeggNOG:ENOG410XS0CEMBL:AC002535EMBL:CP002685EnsemblPlants:AT2G47540EnsemblPlants:AT2G47540.1
entrez:819367GeneID:819367GO:GO:0016021Gramene:AT2G47540.1hmmpanther:PTHR33470hmmpanther:PTHR33470:SF1HOGENOM:HOG000090463
KEGG:ath:AT2G47540OMA:FTVGPFVPfam:PF01190PhylomeDB:O22257PIR:T00430Proteomes:UP000006548RefSeq:NP_182276.1
STRING:3702.AT2G47540.1TAIR:AT2G47540TMHMM:TMhelixUniGene:At.36348UniProt:O22257
Coordinates (TAIR10) chr2:+:19505901..19506504
Molecular Weight (calculated) 19056.10 Da
IEP (calculated) 5.31
GRAVY (calculated) 0.03
Length 173 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQTCSILYI PYMLLLSSLF AAGIATITEG ELLSSMIGVQ GLIYCKRGSK LTPIQGAVAR VTCERTDEYG YEAEDVTVLS QATDAKGYFL ATLSSSEVKD
101: YKKVIKIKEC RAFLELSPSD TCSFPTEINR GISGAILQNY RLLENKLKMK LFTVGPFVFS SEETQDKSIP NGY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)