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AT2G47520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational
Description (TAIR10)
HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 (HRE2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive element binding protein (TAIR:AT3G16770.1); Has 6285 Blast hits to 5826 proteins in 255 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6266; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J020eggNOG:ENOG410YR4UEMBL:AC002535EMBL:AY074645EMBL:CP002685EnsemblPlants:AT2G47520EnsemblPlants:AT2G47520.1
entrez:819365Gene3D:3.30.730.10GeneID:819365Genevisible:O22259GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009873GO:GO:0034059Gramene:AT2G47520.1hmmpanther:PTHR31190hmmpanther:PTHR31190:SF4HOGENOM:HOG000237624
InParanoid:O22259InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT2G47520OMA:MALEDYMPaxDb:O22259Pfam:O22259
Pfam:PF00847Pfscan:PS51032PhylomeDB:O22259PIR:T00432PRIDE:O22259PRINTS:PR00367PRO:PR:O22259
PROSITE:PS51032ProteinModelPortal:O22259Proteomes:UP000006548RefSeq:NP_182274.1SMART:SM00380SMR:O22259STRING:3702.AT2G47520.1
SUPFAM:SSF54171TAIR:AT2G47520tair10-symbols:HRE2UniGene:At.37019UniProt:O22259
Coordinates (TAIR10) chr2:-:19502891..19503490
Molecular Weight (calculated) 19347.60 Da
IEP (calculated) 6.83
GRAVY (calculated) -0.86
Length 171 amino acids
Sequence (TAIR10)
(BLAST)
001: MCGGAIISDF IWSKSESEPS QLGSVSSRKK RKPVSVSEER DGKRERKNLY RGIRQRPWGK WAAEIRDPSK GVRVWLGTFK TADEAARAYD VAAIKIRGRK
101: AKLNFPNTQV EEEADTKPGG NQNELISENQ VESLSEDLMA LEDYMRFYQI PVADDQSATD IGNLWSYQDS N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)