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AT2G47450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : chloroplast signal recognition particle component (CAO)
Curator
Summary (TAIR10)
A component of the chloroplast signal recognition particle pathway that is involved in LHCP targeting. It is downregulated in response to high light. It recognizes the DPLG motif in Lhcb1.
Computational
Description (TAIR10)
CHAOS (CAO); FUNCTIONS IN: chromatin binding; INVOLVED IN: response to high light intensity, protein import into chloroplast thylakoid membrane; LOCATED IN: chloroplast thylakoid membrane, chloroplast, signal recognition particle, chloroplast targeting, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Chromo domain-like (InterPro:IPR016197), Chromo domain (InterPro:IPR000953), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing protein 2 (TAIR:AT4G35450.5); Has 25373 Blast hits to 13489 proteins in 848 species: Archae - 87; Bacteria - 2575; Metazoa - 11620; Fungi - 2006; Plants - 1049; Viruses - 137; Other Eukaryotes - 7899 (source: NCBI BLink).
Protein Annotations
BioGrid:4693DIP:DIP-37639NeggNOG:COG0666eggNOG:KOG0504EMBL:AC002535EMBL:AF013115EMBL:AY050442
EMBL:AY054584EMBL:AY057532EMBL:AY133540EMBL:BT002191EMBL:CP002685EnsemblPlants:AT2G47450EnsemblPlants:AT2G47450.1
entrez:819358EvolutionaryTrace:O22265Gene3D:1.25.40.20GeneID:819358Genevisible:O22265GO:GO:0005786GO:GO:0009507
GO:GO:0009535GO:GO:0009570GO:GO:0009644GO:GO:0009941GO:GO:0042802GO:GO:0045038GO:GO:0046872
GO:GO:0080085Gramene:AT2G47450.1hmmpanther:PTHR24128hmmpanther:PTHR24128:SF11HOGENOM:HOG000239692IntAct:O22265InterPro:IPR000953
InterPro:IPR002110InterPro:IPR016197InterPro:IPR020683InterPro:IPR023780InterPro:IPR030300KEGG:ath:AT2G47450KO:K12271
MINT:MINT-126461ncoils:CoilOMA:MEYLIEWPANTHER:PTHR24128:SF11PaxDb:O22265PDB:1X32PDB:1X3P
PDB:1X3QPDB:2HUGPDB:2N88PDB:3DEOPDB:3DEPPDB:3UI2PDB:5E4W
PDB:5E4XPDBsum:1X32PDBsum:1X3PPDBsum:1X3QPDBsum:2HUGPDBsum:2N88PDBsum:3DEO
PDBsum:3DEPPDBsum:3UI2PDBsum:5E4WPDBsum:5E4XPfam:O22265Pfam:PF00385Pfam:PF12796
Pfscan:PS50013Pfscan:PS50088Pfscan:PS50297PhylomeDB:O22265PIR:T00439PRIDE:O22265PRO:PR:O22265
PROSITE:PS50013PROSITE:PS50088PROSITE:PS50297ProteinModelPortal:O22265Proteomes:UP000006548RefSeq:NP_566101.1SMART:SM00248
SMART:SM00298SMR:O22265STRING:3702.AT2G47450.1SUPFAM:SSF48403SUPFAM:SSF54160TAIR:AT2G47450tair10-symbols:CAO
tair10-symbols:CPSRP43TCDB:3.A.5.1.2UniGene:At.19748UniGene:At.72297UniProt:O22265
Coordinates (TAIR10) chr2:+:19472781..19473902
Molecular Weight (calculated) 41281.30 Da
IEP (calculated) 4.24
GRAVY (calculated) -0.38
Length 373 amino acids
Sequence (TAIR10)
(BLAST)
001: MQKVFLAMDT CALVIHQSLS RIKLSPPKSS SSSSSAFSPE SLPIRRIELC FRGAICAAVQ RNYEETTSSV EEAEEDDESS SSYGEVNKII GSRTAGEGAM
101: EYLIEWKDGH SPSWVPSSYI AADVVSEYET PWWTAARKAD EQALSQLLED RDVDAVDENG RTALLFVAGL GSDKCVRLLA EAGADLDHRD MRGGLTALHM
201: AAGYVRPEVV EALVELGADI EVEDERGLTA LELAREILKT TPKGNPMQFG RRIGLEKVIN VLEGQVFEYA EVDEIVEKRG KGKDVEYLVR WKDGGDCEWV
301: KGVHVAEDVA KDYEDGLEYA VAESVIGKRV GDDGKTIEYL VKWTDMSDAT WEPQDNVDST LVLLYQQQQP MNE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)