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AT2G47440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.870
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G62570.1); Has 357 Blast hits to 345 proteins in 102 species: Archae - 0; Bacteria - 6; Metazoa - 79; Fungi - 59; Plants - 180; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVHSeggNOG:ENOG410Y929EMBL:AC002535EMBL:AK226973EMBL:AY099575EMBL:BT002157EMBL:CP002685
EnsemblPlants:AT2G47440EnsemblPlants:AT2G47440.1entrez:819357Gene3D:1.25.40.10GeneID:819357Gramene:AT2G47440.1hmmpanther:PTHR22904
hmmpanther:PTHR22904:SF7HOGENOM:HOG000239996InterPro:IPR001623InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734KEGG:ath:AT2G47440
OMA:QVGFNRPPfam:PF00515Pfscan:PS50005Pfscan:PS50293PhylomeDB:O22266PIR:T00440PROSITE:PS50005
PROSITE:PS50293Proteomes:UP000006548RefSeq:NP_182266.1SMART:SM00028SMR:O22266STRING:3702.AT2G47440.1SUPFAM:SSF46565
SUPFAM:SSF48452TAIR:AT2G47440UniGene:At.26830UniGene:At.74220UniProt:O22266
Coordinates (TAIR10) chr2:+:19469912..19471660
Molecular Weight (calculated) 58654.70 Da
IEP (calculated) 9.22
GRAVY (calculated) -0.29
Length 526 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVYPNVNGD KKHWWFTHRK LVDKYIKDAT TLMASEEAND VASALHLLDA ALSISPRLET ALELKARSLL FLRRFKDVAD MLQDYIPSLK LDDEGSASSQ
101: GSSSSDGINL LSDASSPGSF KCFSVSDLKK KVMAGICKKC DKEGQWRYVV LGQACCHLGL MEDAMVLLQT GKRLASAEFR RRSICWSDDS FLLLSESSSA
201: SSPPPESENF THLLAHIKLL LRRRAAAIAA LDAGLFSESI RHFSKIVDGR RPAPQGFLAE CYMHRAAAYR SAGRIAEAIA DCNKTLALEP SCIQALETRA
301: ALLETVRCFP DSLHDLEHLK LLYNTILRDR KLPGPVWKRH NVKYREIPGK LCVLTTKTQK LKQKIANGET GNVDYYGLIG VRRGCTRSEL DRAHLLLCLR
401: YKPDRASSFI ERCEFTDQND VDSVRDRAKM SSLLLYRLIQ KGYTAVTAII AEEQRKNAIA HAQKIEERKP VEKSGSIKRT GNAETKPVNS NAYQGVFCRD
501: LAAVGNLLTR AGFNHPIPVK YEALTC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)