AT2G47410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : WD40/YVTN repeat-like-containing domain;Bromodomain | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
WD40/YVTN repeat-like-containing domain;Bromodomain; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Bromodomain (InterPro:IPR001487), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD40/YVTN repeat-like-containing domain;Bromodomain (TAIR:AT5G49430.1); Has 67123 Blast hits to 29366 proteins in 847 species: Archae - 50; Bacteria - 8348; Metazoa - 26818; Fungi - 14890; Plants - 8157; Viruses - 8; Other Eukaryotes - 8852 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:19449133..19456991 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 171546.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.07 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.62 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1520 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDWIHKSTPF MEPSNLAKLV QGNVPLQPHD SHSSLTDLDM DLREVYFLIL HFLSIGPCER TFGHLRDEIL EKGLLPRRYH SWWSRSGIYS GRADDDGISL 0101: PLSYDNLIER YPHIEKDHLV KLLKQLILNP SFPSHMRVEG NAPNAADVPT LLGSGTFSLV DRSNNIESQK ARHVASYLRW PHMHADQVRG LSLREIGGGF 0201: RKHHRAPSIL SACHAIAKPS TMVQKMQNIK KLRGHRNAVY CAIFDRSGRY VITGSDDRLV KIWSMETALC LASCRGHEGD ITDLAVSSNN ALVASASNDF 0301: VIRVWRLPDG MPISVLRGHT GAVTAIAFSP RQASVYQLLS SSDDGTCRIW DARYSQWLPR IYVPSPSDAN TGSTSNASQS HQILCCAYNA NGTIFVTGSS 0401: DSNARVWSAS KPNLDDAEQP THELDVLRGH ENDVNYVQFS GCAVAPKSST ADALKEDSYP KFKNSWFCHD NIVTCSRDGS AIIWTPRSRK FHGKSGRWMK 0501: GYHLKVPPPP LPPQPPRGGP RQRFLPTPRG VNMIIWSLDN RFVLAAIMDC RICVWNAADG SLVHCLTGHS ESSYVLDVHP FNPRIAMSAG YDGKTIIWDI 0601: WEGIPIKVYE IGRFKLVDGK FSQDGTSIVL SDDVGQIYFL NTGQGESQKN AKYDQFFLGD YRPLIRDTNG HVLDQETQLL PHRRNLQDLL CDSSMIPYPE 0701: PDQTMFQQRR LGALGVEWRP SSIKFSVGPD FSLGQDYIMP PLADLDRLIE PLPEFIDAMY WEPEHEVLSD DNDSEYNAEV SSDGARASPC SNSSNELECS 0801: SEDSDVENIH ESSYHWKRRR KHPKVNVSTS SGRRDKRILD ENDSSNSGIK RTKNRRIVVK ASKRKHSDVK ASRPQRAAAQ NARSLLSKIS GSSSDEVDDD 0901: NDSSNSESDR SIPTLRQLDK PSQMLESLSN DKQKKRLIVK ISVKKPAESM GSKGDVINQA DLEQLSSKPL EENHRVIGIY SREPGSSSVD AKGDSGCQSI 1001: PYSMNTPQRE KADNQLIRSS DQDQNMCKWR EEIPVCEPTE LTAPENIEEA QPFYGDEADE ILPKKVRRLR LKLRHPNSPR KLEPDEVADD LADGGDGFAS 1101: IAPSFMNPIM DSEPVIDSVR DSSAHNFEFG EATADVIRRK RSIRSESSTR NSALRIRLGS GSVDKIKKQG IPSTSVYDDA SLEEWPSTSK AGSRSRSASV 1201: SKPSLHTGIR LNSVSGKISW LLLSEHEEGC RYIPQLGDEV IYFKQGHQEF LKTKELNDRD RSRYLPRNLG AVEICKVEKL NYDTYPGSGD SCCKMTLRVL 1301: DSSSSHASRK EFQLTLPELI NFPDFIVEKT RYDAAIQTNW KIGNECRVWW RDATGEGGAW WEGRIESSQV KSTDFPESPW ERYRVVYETG ETSLHSPWEF 1401: DNPEFPWEKS TIEDERREKL LSLFAGLVKS ISKHQDSYGI QKLNEAAQKM DFCNRFPVPL YPELIHERLE NQYYRSIESF KHDVDAMLSN AELYFVRSAH 1501: MLSKIKRLRD KLTKTLRKLI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)