suba logo
AT2G47400.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CP12 domain-containing protein 1
Curator
Summary (TAIR10)
CP12-1 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle.
Computational
Description (TAIR10)
CP12 domain-containing protein 1 (CP12-1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: negative regulation of reductive pentose-phosphate cycle; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function CP12 (InterPro:IPR003823); BEST Arabidopsis thaliana protein match is: CP12 domain-containing protein 2 (TAIR:AT3G62410.1); Has 264 Blast hits to 264 proteins in 70 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2594-MONOMERBioGrid:4688eggNOG:ENOG410J0MZeggNOG:ENOG4112442EMBL:AC002337EMBL:AY052217EMBL:AY062839
EMBL:AY114595EMBL:AY143796EMBL:CP002685EnsemblPlants:AT2G47400EnsemblPlants:AT2G47400.1entrez:819353GeneID:819353
Genevisible:O22914GO:GO:0005507GO:GO:0009507GO:GO:0009570GO:GO:0009744GO:GO:0009941GO:GO:0016151
GO:GO:0019253GO:GO:0043234GO:GO:0080153Gramene:AT2G47400.1hmmpanther:PTHR33921hmmpanther:PTHR33921:SF2HOGENOM:HOG000237802
InParanoid:O22914IntAct:O22914InterPro:IPR003823iPTMnet:O22914KEGG:ath:AT2G47400OMA:KRMVMSVPaxDb:O22914
Pfam:O22914Pfam:PF02672PhylomeDB:O22914PIR:G84914PRIDE:O22914PRO:PR:O22914Proteomes:UP000006548
RefSeq:NP_566100.2SMART:SM01093STRING:3702.AT2G47400.1TAIR:AT2G47400tair10-symbols:CP12tair10-symbols:CP12-1UniGene:At.20118
UniGene:At.71629UniProt:O22914
Coordinates (TAIR10) chr2:+:19446889..19447263
Molecular Weight (calculated) 13487.80 Da
IEP (calculated) 4.57
GRAVY (calculated) -0.50
Length 124 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTIAAAGLN VATPRVVVRP VARVLGPVRL NYPWKFGSMK RMVVVKATSE GEISEKVEKS IQEAKETCAD DPVSGECVAA WDEVEELSAA ASHARDKKKA
101: GGSDPLEEYC NDNPETDECR TYDN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)