AT2G47350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HIT zinc finger ;PAPA-1-like conserved region | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HIT zinc finger ;PAPA-1-like conserved region; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529), PAPA-1-like conserved region (InterPro:IPR006880); BEST Arabidopsis thaliana protein match is: PAPA-1-like family protein / zinc finger (HIT type) family protein (TAIR:AT3G06660.1); Has 3160 Blast hits to 2461 proteins in 330 species: Archae - 7; Bacteria - 184; Metazoa - 1235; Fungi - 390; Plants - 202; Viruses - 26; Other Eukaryotes - 1116 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:19434588..19437045 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53948.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.32 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.08 | ||||||||||||||||||||||||||||||||||||
| Length | 486 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDNGVAYCD GMTNTVRKKR SLTCRRPRPE GSSVLTSSDR FSKISSDDIP AFDTNPRRKE FSLSHCISRA ESIAESERGN NDFRRREIIN RNKRSTEGVL 101: APASSKYPSR EVEGNGMING KGTDSGELEG ETKRMKLKIG GVSRLVHANG SSRKSSKPVT DTIRSNHDLQ ESSEDCNSPL DKKADLEGVT WDAEIDGSMT 201: GRRKQEEPSG LVRKSKRAPK KRVFDSDDDS DDEIRYLEKL KYKRVSVCNE DTESGRKQLT PSGITNGENS GKKKAVSEQA SEDMDCAEEI ETASDEKEIG 301: NDNKRESTMT SRQRALASGR SSAIDFSDGL PPTSRRKKET LSEMEQQLKK AEAAQRRKVQ IEKAARESEE GAIKKILGQD SSRKKRGDKI KKRLDDLAQE 401: KAAQEERAST CCIRTIMGPN GTTVSFPIDK VPSLFDPKPS GYPPPRENCV GPSCTNPYKY RDSKTKVPLC SLKCYKAVQG QQIAPP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)