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AT2G47340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G02550.1); Has 153 Blast hits to 151 proteins in 20 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 4; Plants - 145; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
EMBL:AC002337EMBL:CP002685EnsemblPlants:AT2G47340EnsemblPlants:AT2G47340.1entrez:819347Gene3D:1.20.140.40GeneID:819347
GO:GO:0004857Gramene:AT2G47340.1hmmpanther:PTHR31707HOGENOM:HOG000114081InterPro:IPR006501KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11
KEGG:ath:AT2G47340OMA:NECIAAIPfam:PF04043PhylomeDB:O22908PIR:A84914Proteomes:UP000006548RefSeq:NP_182256.1
SMART:SM00856SMR:O22908SUPFAM:SSF101148TAIR:AT2G47340TIGRfam:TIGR01614TIGRFAMs:TIGR01614UniGene:At.49381
unipathway:UPA00545UniProt:O22908
Coordinates (TAIR10) chr2:+:19432168..19433016
Molecular Weight (calculated) 30038.30 Da
IEP (calculated) 4.11
GRAVY (calculated) -0.21
Length 282 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPYKAIILI GVTVCCYTFS GVSNVHATGR SVEETSQVPA SSPDPSLIEP PVSSISVVPA SAPSPTSEDI NTGSNLAPTA AVSAPGPSQE DIDINFDSVT
101: NIADLAPKFE HINKFDFSSM KIDTTAKDLC KNTDYNNECI AAILPDLQKQ AEGEGGDGGI APKDVMRMEA ESLLKKANAT LDYAKRVVED RKTPMPVKEA
201: MSVCVENYDS LISGLEDAKM AMEEGDYGRL DSVLSAAISD VSTCSDNFVD IPDVDSPTAS LDDLMKKLCS NVLAMSQKVQ NR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)