AT2G47340.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.958 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G02550.1); Has 153 Blast hits to 151 proteins in 20 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 4; Plants - 145; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:19432168..19433016 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30038.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.11 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||
| Length | 282 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEPYKAIILI GVTVCCYTFS GVSNVHATGR SVEETSQVPA SSPDPSLIEP PVSSISVVPA SAPSPTSEDI NTGSNLAPTA AVSAPGPSQE DIDINFDSVT 101: NIADLAPKFE HINKFDFSSM KIDTTAKDLC KNTDYNNECI AAILPDLQKQ AEGEGGDGGI APKDVMRMEA ESLLKKANAT LDYAKRVVED RKTPMPVKEA 201: MSVCVENYDS LISGLEDAKM AMEEGDYGRL DSVLSAAISD VSTCSDNFVD IPDVDSPTAS LDDLMKKLCS NVLAMSQKVQ NR |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)