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AT2G47330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.968
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G20920.1); Has 46798 Blast hits to 46047 proteins in 3085 species: Archae - 817; Bacteria - 24489; Metazoa - 6167; Fungi - 4661; Plants - 2616; Viruses - 11; Other Eukaryotes - 8037 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1306-MONOMEREC:3.6.4.13eggNOG:ENOG410XSQVeggNOG:KOG0339EMBL:AC002337EMBL:AY057700EMBL:AY124871
EMBL:CP002685EnsemblPlants:AT2G47330EnsemblPlants:AT2G47330.1entrez:819346Gene3D:3.40.50.300GeneID:819346Genevisible:O22907
GO:GO:0003723GO:GO:0004386GO:GO:0005524Gramene:AT2G47330.1hmmpanther:PTHR24031hmmpanther:PTHR24031:SF125HOGENOM:HOG000268793
InParanoid:O22907InterPro:IPR000629InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001InterPro:IPR014014InterPro:IPR027417
iPTMnet:O22907KEGG:ath:AT2G47330KO:K12835OMA:TLKTGMMPaxDb:O22907Pfam:O22907Pfam:PF00270
Pfam:PF00271Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195PhylomeDB:O22907PIR:H84913PRIDE:O22907
PRO:PR:O22907PROSITE:PS00039PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:O22907Proteomes:UP000006548
RefSeq:NP_566099.1scanprosite:PS00039SMART:SM00487SMART:SM00490SMR:O22907STRING:3702.AT2G47330.1SUPFAM:SSF52540
TAIR:AT2G47330UniGene:At.12226UniGene:At.25582UniProt:O22907
Coordinates (TAIR10) chr2:-:19429083..19431617
Molecular Weight (calculated) 83055.30 Da
IEP (calculated) 5.63
GRAVY (calculated) -0.51
Length 760 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)